BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0512200 Os01g0512200|AK099665
         (317 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0512200  Conserved hypothetical protein                      620   e-178
AK107048                                                          561   e-160

>Os01g0512200 Conserved hypothetical protein
          Length = 317

 Score =  620 bits (1598), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 307/317 (96%), Positives = 307/317 (96%)

Query: 1   LIGFVYSLREIQELKESKFDDDKHSRVKELVKNMQTVLSHEIGPVSLNAQEKVSLPDDLV 60
           LIGFVYSLREIQELKESKFDDDKHSRVKELVKNMQTVLSHEIGPVSLNAQEKVSLPDDLV
Sbjct: 1   LIGFVYSLREIQELKESKFDDDKHSRVKELVKNMQTVLSHEIGPVSLNAQEKVSLPDDLV 60

Query: 61  LNENLAELVDIISEDDTTLSSSIVFYPRSCGSVETRDEPAXXXXXXXXXXEHRKRHGLYY 120
           LNENLAELVDIISEDDTTLSSSIVFYPRSCGSVETRDEPA          EHRKRHGLYY
Sbjct: 61  LNENLAELVDIISEDDTTLSSSIVFYPRSCGSVETRDEPALSLGSSSLLSEHRKRHGLYY 120

Query: 121 LPTGKAEDGPVDYPHANDPLLPASSESALDDKLKTIQPVTGGKKPKAVKSRPKVVKLDGE 180
           LPTGKAEDGPVDYPHANDPLLPASSESALDDKLKTIQPVTGGKKPKAVKSRPKVVKLDGE
Sbjct: 121 LPTGKAEDGPVDYPHANDPLLPASSESALDDKLKTIQPVTGGKKPKAVKSRPKVVKLDGE 180

Query: 181 DFLSSMVASASVPKEDSLSGAVRGVLLGRDLKPSSSQKASDKAYEGIINKMDSGESSSQW 240
           DFLSSMVASASVPKEDSLSGAVRGVLLGRDLKPSSSQKASDKAYEGIINKMDSGESSSQW
Sbjct: 181 DFLSSMVASASVPKEDSLSGAVRGVLLGRDLKPSSSQKASDKAYEGIINKMDSGESSSQW 240

Query: 241 KNNVDADFVGHPTSSSRPSIQQSHDKESTNPLESDGKEARKHRRSRSGHRQGKHKHRERH 300
           KNNVDADFVGHPTSSSRPSIQQSHDKESTNPLESDGKEARKHRRSRSGHRQGKHKHRERH
Sbjct: 241 KNNVDADFVGHPTSSSRPSIQQSHDKESTNPLESDGKEARKHRRSRSGHRQGKHKHRERH 300

Query: 301 CTQPDVPQAPIIQDFLL 317
           CTQPDVPQAPIIQDFLL
Sbjct: 301 CTQPDVPQAPIIQDFLL 317



>AK107048 
          Length = 287

 Score =  561 bits (1445), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/287 (96%), Positives = 277/287 (96%)

Query: 31  VKNMQTVLSHEIGPVSLNAQEKVSLPDDLVLNENLAELVDIISEDDTTLSSSIVFYPRSC 90
           VKNMQTVLSHEIGPVSLNAQEKVSLPDDLVLNENLAELVDIISEDDTTLSSSIVFYPRSC
Sbjct: 1   VKNMQTVLSHEIGPVSLNAQEKVSLPDDLVLNENLAELVDIISEDDTTLSSSIVFYPRSC 60

Query: 91  GSVETRDEPAXXXXXXXXXXEHRKRHGLYYLPTGKAEDGPVDYPHANDPLLPASSESALD 150
           GSVETRDEPA          EHRKRHGLYYLPTGKAEDGPVDYPHANDPLLPASSESALD
Sbjct: 61  GSVETRDEPALSLGSSSLLSEHRKRHGLYYLPTGKAEDGPVDYPHANDPLLPASSESALD 120

Query: 151 DKLKTIQPVTGGKKPKAVKSRPKVVKLDGEDFLSSMVASASVPKEDSLSGAVRGVLLGRD 210
           DKLKTIQPVTGGKKPKAVKSRPKVVKLDGEDFLSSMVASASVPKEDSLSGAVRGVLLGRD
Sbjct: 121 DKLKTIQPVTGGKKPKAVKSRPKVVKLDGEDFLSSMVASASVPKEDSLSGAVRGVLLGRD 180

Query: 211 LKPSSSQKASDKAYEGIINKMDSGESSSQWKNNVDADFVGHPTSSSRPSIQQSHDKESTN 270
           LKPSSSQKASDKAYEGIINKMDSGESSSQWKNNVDADFVGHPTSSSRPSIQQSHDKESTN
Sbjct: 181 LKPSSSQKASDKAYEGIINKMDSGESSSQWKNNVDADFVGHPTSSSRPSIQQSHDKESTN 240

Query: 271 PLESDGKEARKHRRSRSGHRQGKHKHRERHCTQPDVPQAPIIQDFLL 317
           PLESDGKEARKHRRSRSGHRQGKHKHRERHCTQPDVPQAPIIQDFLL
Sbjct: 241 PLESDGKEARKHRRSRSGHRQGKHKHRERHCTQPDVPQAPIIQDFLL 287



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,121,840
Number of extensions: 471055
Number of successful extensions: 1590
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1590
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 156 (64.7 bits)