Os01g0500900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tyrosyl-tRNA synthetase, class Ib family protein.
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Os01g0500900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tyrosyl-tRNA synthetase, class Ib family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 206.36 | 0.675 | 7.56 | -0.719 | 1.21 | -0.929 | 0.248 | -7.32 | -0.835 | 17.2 | 0.83 | 1441 | -- | -- |
| 226.11 | 0.7 | 7.71 | -1.58 | 1.06 | -0.74 | 0.309 | -- | -1.13 | 17.5 | 52.33 | 4812 | -- | -- |
| 206.45 | 0.669 | 7.56 | -0.722 | 1.21 | -0.937 | -- | -7.36 | -0.837 | 17.2 | 0.83 | 1445 | -- | -- |
| 226.31 | 0.701 | 7.71 | -1.58 | 1.06 | -0.734 | -- | -- | -1.13 | 17.5 | 53.08 | 4812 | -- | -- |
| 251.49 | 0.739 | 7.55 | -1.44 | -- | -1.64 | -- | -4.17 | -0.927 | -- | 0.7121 | 2138 | -- | -- |
| 236.53 | 0.721 | 7.69 | -1.63 | 1.18 | -- | 0.201 | -- | -1.02 | 17.3 | -- | -- | -- | -- |
| 236.63 | 0.72 | 7.69 | -1.63 | 1.18 | -- | -- | -- | -1.02 | 17.3 | -- | -- | -- | -- |
| 238.93 | 0.72 | 7.72 | -1.6 | -- | -1.8 | -- | -- | -1.22 | -- | 9.135 | 2089 | -- | -- |
| 282.17 | 0.782 | 7.71 | -- | 1.23 | -0.838 | -- | -- | -1.13 | 17.3 | 60 | 24377 | -- | -- |
| 308.99 | 0.821 | 7.68 | -1.67 | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
| 306.28 | 0.819 | 7.65 | -- | 1.21 | -- | -- | -- | -0.837 | 17.3 | -- | -- | -- | -- |
| 304.4 | 0.813 | 7.69 | -- | -- | -1.89 | -- | -- | -1.05 | -- | 9.983 | 2080 | -- | -- |
| 382.2 | 0.913 | 7.64 | -- | -- | -- | -- | -- | -0.863 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.15 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 6 | 196.88 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 10 | 197.16 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 12 | 197.22 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 13 | 197.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 15 | 197.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 16 | 197.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 18 | 197.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 19 | 197.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 20 | 197.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 24 | 197.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 27 | 197.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 28 | 197.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 33 | 198.21 | wind | 7.0 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 36 | 198.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 37 | 198.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 38 | 198.42 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 40 | 198.61 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 41 | 198.62 | wind | 7.0 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 45 | 198.76 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 47 | 198.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 48 | 198.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 53 | 198.89 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 61 | 199.07 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 62 | 199.08 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 68 | 199.19 | wind | 7.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 76 | 199.28 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 91 | 199.39 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 99 | 199.48 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 102 | 199.55 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 116 | 199.73 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 123 | 199.75 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 125 | 199.76 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 2 |
| 129 | 199.80 | wind | 7.0 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 130 | 199.80 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 2 | 13 |
| 132 | 199.82 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 135 | 199.84 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 137 | 199.85 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 164 | 200.07 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 170 | 200.09 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 179 | 200.14 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 188 | 200.17 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 189 | 200.17 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 24 | 19 |
| 229 | 200.37 | humidity | 60.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 245 | 200.47 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 269 | 200.56 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 5 | 22 |
| 272 | 200.57 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 274 | 200.58 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 281 | 200.60 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 7 | 20 |
| 314 | 200.69 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 316 | 200.69 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 21 |
| 318 | 200.70 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 333 | 200.74 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 349 | 200.78 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 359 | 200.80 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 380 | 200.86 | humidity | 60.0 | 43200 | > th | dose dependent | no | NA | NA |
| 403 | 200.91 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 408 | 200.91 | wind | 9.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 409 | 200.91 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 419 | 200.94 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 481 | 201.08 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 483 | 201.09 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 490 | 201.11 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 500 | 201.14 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 504 | 201.15 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 539 | 201.23 | wind | 3.0 | 43200 | > th | dose dependent | sin | 4 | NA |
| 543 | 201.24 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 556 | 201.26 | wind | 1.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 598 | 201.36 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 613 | 201.41 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 13 |
| 624 | 201.43 | humidity | 60.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 647 | 201.48 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 651 | 201.49 | wind | 7.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 671 | 201.52 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 682 | 201.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 688 | 201.55 | temperature | 20.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 691 | 201.55 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 698 | 201.56 | wind | 9.0 | 43200 | < th | dose independent | rect. | 1 | 22 |
| 731 | 201.61 | wind | 9.0 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 739 | 201.63 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 750 | 201.64 | wind | 9.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 757 | 201.65 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 17 |
| 769 | 201.67 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 813 | 201.72 | wind | 7.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 823 | 201.73 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 827 | 201.74 | wind | 9.0 | 43200 | < th | dose independent | no | NA | NA |
| 829 | 201.74 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 834 | 201.74 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 895 | 201.80 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 900 | 201.81 | wind | 9.0 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 924 | 201.83 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 959 | 201.87 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 17 |
| 966 | 201.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 988 | 201.91 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 10 |