BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0500900 Os01g0500900|AK066713
         (497 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02660.1  | chr3:570221-571756 REVERSE LENGTH=512              587   e-168

>AT3G02660.1 | chr3:570221-571756 REVERSE LENGTH=512
          Length = 511

 Score =  587 bits (1513), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/440 (65%), Positives = 339/440 (77%), Gaps = 28/440 (6%)

Query: 61  ATTSESLGSASASPR--ELKAYCGFDPTAESXXXXXXXXXXXXSWFRRCGHNAVALVGGA 118
           + TSE+L SA + P+   L+ YCGFDPTAES            SWF+RCGH AV L+GGA
Sbjct: 97  SITSENLRSACSDPKVAPLRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGA 156

Query: 119 TGRVGDPSGKSAERPELDLAAVETNSNAIKSLIGQILDRAPEPSQHSQSGKNLNLEQNEQ 178
           TGRVGDPSGKS ERPELD   +E N   I  +I +IL   P P                 
Sbjct: 157 TGRVGDPSGKSLERPELDADTLEKNIAGITKIIIKILGSNPSPG---------------- 200

Query: 179 ALVNSGEKMGSFQILDNYDWWKDITLLDFLKEVGRFARVGTMIAKESVKKRLMSEDGMSY 238
                    GS+ I +NYDWWKD+T+LDFL +VGRFARVGTM+AKESVKKRL SE GMSY
Sbjct: 201 ---------GSYVIFNNYDWWKDMTMLDFLNKVGRFARVGTMMAKESVKKRLESEQGMSY 251

Query: 239 TEFTYQLLQGYDFLYMFRNMGVNVQIGGSDQWGNITAGTELIRKILQVE-GAHGLTFPLL 297
           TEFTYQLLQ YDFL++F+N G+NVQIGGSDQWGNITAGT+LIRKILQ E  A+GLTFPLL
Sbjct: 252 TEFTYQLLQAYDFLHLFKNEGINVQIGGSDQWGNITAGTDLIRKILQAEEAAYGLTFPLL 311

Query: 298 LKSDGTKFGKTEDGAIWLSPKMLSPYKFYQYFFSVPDIDVIRFMKILTFMSLDEIQELEE 357
           LK+DGTKFGK+EDGAIWLSP MLSPYKFYQYFFSVPD+DVIRF+K LTF+SLDEI+ LE+
Sbjct: 312 LKNDGTKFGKSEDGAIWLSPSMLSPYKFYQYFFSVPDVDVIRFLKTLTFLSLDEIKILED 371

Query: 358 SMKKPGYVPNTIQRRLAEEVTRFVHGEEGLEEALKATEALRPGAQTQLDSQTIEGIADDV 417
            M KPGYVPNT Q +LAEEVTRFVHGEEGL+EA+KATEALRPGA+T+LD   IE IA+D+
Sbjct: 372 QMSKPGYVPNTAQIKLAEEVTRFVHGEEGLKEAIKATEALRPGAETKLDWNLIERIAEDI 431

Query: 418 PSCFLPYGQVLKSPLVDLAVSTGLLASKSAVRRLIKQGGLYLNNIRIDSEDKLVEEGDVV 477
           PSC LP  +V    +VDL+VS GL  SKSA RR++KQGG Y+NN R+D E+K V+E D+V
Sbjct: 432 PSCSLPIDRVSGLSIVDLSVSAGLFESKSAARRMLKQGGFYMNNERVDDENKRVDEEDIV 491

Query: 478 DGKVLLLSAGKKNKMVVRIS 497
           +G+ L+LSAGKKNK+VVRIS
Sbjct: 492 EGRGLVLSAGKKNKVVVRIS 511



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,100,171
Number of extensions: 367782
Number of successful extensions: 1030
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1028
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,282,721
Effective search space: 3263392074
Effective search space used: 3263392074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)