BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0500900 Os01g0500900|AK066713
         (497 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0500900  Tyrosyl-tRNA synthetase, class Ib family protein    896   0.0  

>Os01g0500900 Tyrosyl-tRNA synthetase, class Ib family protein
          Length = 497

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/497 (89%), Positives = 445/497 (89%)

Query: 1   MASIAMAASLRTFLRPHXXXXXXXXXXXXXXXXXXXXXXXXXTVIXXXXXXXXXXXXXXX 60
           MASIAMAASLRTFLRPH                         TVI               
Sbjct: 1   MASIAMAASLRTFLRPHRCRLLLRQSRSLSASAAPAGAAAASTVIRRSVVEVLRERGLVE 60

Query: 61  ATTSESLGSASASPRELKAYCGFDPTAESXXXXXXXXXXXXSWFRRCGHNAVALVGGATG 120
           ATTSESLGSASASPRELKAYCGFDPTAES            SWFRRCGHNAVALVGGATG
Sbjct: 61  ATTSESLGSASASPRELKAYCGFDPTAESLHLGNLLGLVVLSWFRRCGHNAVALVGGATG 120

Query: 121 RVGDPSGKSAERPELDLAAVETNSNAIKSLIGQILDRAPEPSQHSQSGKNLNLEQNEQAL 180
           RVGDPSGKSAERPELDLAAVETNSNAIKSLIGQILDRAPEPSQHSQSGKNLNLEQNEQAL
Sbjct: 121 RVGDPSGKSAERPELDLAAVETNSNAIKSLIGQILDRAPEPSQHSQSGKNLNLEQNEQAL 180

Query: 181 VNSGEKMGSFQILDNYDWWKDITLLDFLKEVGRFARVGTMIAKESVKKRLMSEDGMSYTE 240
           VNSGEKMGSFQILDNYDWWKDITLLDFLKEVGRFARVGTMIAKESVKKRLMSEDGMSYTE
Sbjct: 181 VNSGEKMGSFQILDNYDWWKDITLLDFLKEVGRFARVGTMIAKESVKKRLMSEDGMSYTE 240

Query: 241 FTYQLLQGYDFLYMFRNMGVNVQIGGSDQWGNITAGTELIRKILQVEGAHGLTFPLLLKS 300
           FTYQLLQGYDFLYMFRNMGVNVQIGGSDQWGNITAGTELIRKILQVEGAHGLTFPLLLKS
Sbjct: 241 FTYQLLQGYDFLYMFRNMGVNVQIGGSDQWGNITAGTELIRKILQVEGAHGLTFPLLLKS 300

Query: 301 DGTKFGKTEDGAIWLSPKMLSPYKFYQYFFSVPDIDVIRFMKILTFMSLDEIQELEESMK 360
           DGTKFGKTEDGAIWLSPKMLSPYKFYQYFFSVPDIDVIRFMKILTFMSLDEIQELEESMK
Sbjct: 301 DGTKFGKTEDGAIWLSPKMLSPYKFYQYFFSVPDIDVIRFMKILTFMSLDEIQELEESMK 360

Query: 361 KPGYVPNTIQRRLAEEVTRFVHGEEGLEEALKATEALRPGAQTQLDSQTIEGIADDVPSC 420
           KPGYVPNTIQRRLAEEVTRFVHGEEGLEEALKATEALRPGAQTQLDSQTIEGIADDVPSC
Sbjct: 361 KPGYVPNTIQRRLAEEVTRFVHGEEGLEEALKATEALRPGAQTQLDSQTIEGIADDVPSC 420

Query: 421 FLPYGQVLKSPLVDLAVSTGLLASKSAVRRLIKQGGLYLNNIRIDSEDKLVEEGDVVDGK 480
           FLPYGQVLKSPLVDLAVSTGLLASKSAVRRLIKQGGLYLNNIRIDSEDKLVEEGDVVDGK
Sbjct: 421 FLPYGQVLKSPLVDLAVSTGLLASKSAVRRLIKQGGLYLNNIRIDSEDKLVEEGDVVDGK 480

Query: 481 VLLLSAGKKNKMVVRIS 497
           VLLLSAGKKNKMVVRIS
Sbjct: 481 VLLLSAGKKNKMVVRIS 497



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,095,973
Number of extensions: 553116
Number of successful extensions: 1522
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1521
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 392
Effective length of database: 11,553,331
Effective search space: 4528905752
Effective search space used: 4528905752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)