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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0496900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.47 (0.0294) R2 : 0.295
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.41 (0.11) R2dE : 0.26 R2E : 0.276
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.192 (0.0624) R2dN8 : 0.0194 R2N8 : 0.0347
σ : 0.55
deviance : 139.68
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.22
memory length : 2
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.4 0.522 3.4 0.836 0.405 0.955 -0.385 2.89 0.353 10.4 22.7 2 -- --
127.1 0.525 3.44 0.423 0.405 1.17 0.0909 -- 0.289 10.4 24.85 2 -- --
123.85 0.518 3.41 0.778 0.414 0.935 -- 2.56 0.343 10.6 22.9 3 -- --
127.04 0.525 3.43 0.415 0.401 1.22 -- -- 0.327 10.4 25.7 3 -- --
132.84 0.537 3.43 0.714 -- 1.2 -- 2.3 0.296 -- 22.14 2 -- --
147.45 0.569 3.42 0.577 0.712 -- 0.739 -- 0.392 13 -- -- -- --
149.58 0.573 3.42 0.603 0.711 -- -- -- 0.395 12.7 -- -- -- --
135.84 0.543 3.46 0.389 -- 1.36 -- -- 0.255 -- 24.5 2 -- --
131.63 0.534 3.44 -- 0.391 1.33 -- -- 0.28 10 25.7 2 -- --
181.18 0.629 3.43 0.577 -- -- -- -- 0.382 -- -- -- -- --
159.16 0.59 3.43 -- 0.701 -- -- -- 0.328 12.7 -- -- -- --
139.68 0.55 3.47 -- -- 1.41 -- -- 0.192 -- 24.22 2 -- --
189.97 0.643 3.44 -- -- -- -- -- 0.318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 117.17 temperature 20 270 > th dose dependent rect. 3 13
2 117.82 temperature 15 720 > th dose dependent rect. 4 3
10 119.19 temperature 20 30 > th dose dependent rect. 5 13
11 119.24 temperature 10 270 > th dose dependent rect. 3 13
28 120.19 temperature 20 270 > th dose dependent sin 2 NA
35 120.57 temperature 10 720 > th dose dependent rect. 21 18
45 121.06 temperature 15 720 > th dose dependent rect. 23 16
49 121.16 temperature 15 720 > th dose dependent sin 6 NA
69 121.43 temperature 20 10 > th dose dependent rect. 5 21
75 121.55 temperature 20 720 > th dose independent rect. 4 3
134 122.39 temperature 25 720 < th dose dependent rect. 2 14
147 122.51 temperature 30 720 < th dose dependent rect. 23 14
149 122.53 temperature 20 10 > th dose dependent rect. 5 19
155 122.57 temperature 25 720 < th dose dependent sin 3 NA
199 122.97 temperature 30 270 < th dose dependent rect. 7 9
203 123.03 temperature 20 10 > th dose dependent sin 22 NA
218 123.14 temperature 30 90 < th dose independent rect. 7 22
357 123.94 temperature 15 270 > th dose dependent rect. 2 22
438 124.30 temperature 20 720 > th dose independent rect. 4 12
446 124.31 temperature 25 10 > th dose dependent rect. 8 23
563 124.74 temperature 15 720 > th dose dependent rect. 23 10
576 124.78 temperature 25 720 > th dose independent rect. 6 9
662 125.01 temperature 25 10 > th dose dependent no NA NA
767 125.32 temperature 25 10 > th dose dependent rect. 8 12
790 125.37 temperature 25 270 > th dose independent rect. 9 8
817 125.43 temperature 30 90 < th dose dependent rect. 9 8
850 125.52 temperature 25 10 > th dose dependent rect. 11 23
894 125.62 temperature 25 270 < th dose independent rect. 7 9