BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0496900 Os01g0496900|AK069894
         (493 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16200.1  | chr3:5491619-5493605 REVERSE LENGTH=457            586   e-167

>AT3G16200.1 | chr3:5491619-5493605 REVERSE LENGTH=457
          Length = 456

 Score =  586 bits (1510), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 267/326 (81%), Positives = 298/326 (91%)

Query: 159 VPWCRSKTGKIVEWTSKDLLRGLEEFVPIYETRPIKNNMYGMGFDHSFGLWFVARWLKPD 218
           VPWCRSK GK VEWTSKDLL+GLEEFVPIYETRPIKNNMYGMGFDHSFGLWF+ARWLKPD
Sbjct: 127 VPWCRSKHGKEVEWTSKDLLKGLEEFVPIYETRPIKNNMYGMGFDHSFGLWFMARWLKPD 186

Query: 219 LMIESGAFKGHSTWVLRQAMPNTKIISLSPRHPEKYLKKGPAYVDGNCTYLAGKDFIDFG 278
           +MIESGAFKGHSTWVLRQAMP+T +ISL+PRHPEKYL+KGPAYVDGNCTY AGKDF+DFG
Sbjct: 187 MMIESGAFKGHSTWVLRQAMPDTPMISLTPRHPEKYLRKGPAYVDGNCTYFAGKDFVDFG 246

Query: 279 SVDWGKLLRNHGISDLSRVLVFFDDHQSELKRLKQASIVGFRHIIFEDNYDTGTGDHYSL 338
           SVDW  +LR HGI+DLSRV+VFFDDHQ+ELKRLKQA   GFRH+IFEDNYDTGTGDHYSL
Sbjct: 247 SVDWKNVLRKHGITDLSRVIVFFDDHQNELKRLKQALKAGFRHLIFEDNYDTGTGDHYSL 306

Query: 339 RQICDQEHIRGGGHSCFWDSDEARLRSRRKSFWEKAVETDELCGKDDAWWGVRGYMRDNF 398
           RQICDQ HIRGGGHSCF DSDEAR+RS+RK FWEKAV+T+ELCG  + WWGV+G MRD+F
Sbjct: 307 RQICDQSHIRGGGHSCFKDSDEARMRSKRKKFWEKAVDTEELCGPGETWWGVKGEMRDDF 366

Query: 399 NHSNKAISYKEHFQNSRLVESVLDLYWELPPVAGPSLTHQTRYDPARASDPIIEDGRFGM 458
           NH+N  ISY +HFQNSR VES+LD+YWELPPVAGPSLTHQ+RYDPARA+ PI+ DG+  +
Sbjct: 367 NHTNTPISYNQHFQNSRYVESILDVYWELPPVAGPSLTHQSRYDPARATPPIVADGKHRL 426

Query: 459 FQRIGLARLDASVFNGYTQMSYVQIS 484
           FQRIGL RLD SVFNGYTQM Y++IS
Sbjct: 427 FQRIGLGRLDKSVFNGYTQMVYLEIS 452



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,205,489
Number of extensions: 386280
Number of successful extensions: 709
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 390
Effective length of database: 8,282,721
Effective search space: 3230261190
Effective search space used: 3230261190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)