BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0496900 Os01g0496900|AK069894
         (493 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0496900  Conserved hypothetical protein                      755   0.0  

>Os01g0496900 Conserved hypothetical protein
          Length = 493

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/493 (77%), Positives = 382/493 (77%)

Query: 1   MLTSSLTRXXXXXFVWNGRSLDXXXXXXXXXXXXXXXXXXXXXXRPASMHDTGLXXXXXX 60
           MLTSSLTR     FVWNGRSLD                      RPASMHDTGL      
Sbjct: 1   MLTSSLTRPPPPPFVWNGRSLDLSPNTTGLPPPPLSTTPISLCSRPASMHDTGLSARAAG 60

Query: 61  XXXXXXXXXXXXXXXXVGDDDDESKIRKANPAFVXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                           VGDDDDESKIRKANPAFV                          
Sbjct: 61  ASSSSSPYAGASSATSVGDDDDESKIRKANPAFVAAAYARLHSSHRAAASFLLLLAVAAT 120

Query: 121 XXXIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPWCRSKTGKIVEWTSKDLLRG 180
              IG                                 VPWCRSKTGKIVEWTSKDLLRG
Sbjct: 121 AFLIGRARPRADCPPPRLDARFLALPDAAAASDFGALGVPWCRSKTGKIVEWTSKDLLRG 180

Query: 181 LEEFVPIYETRPIKNNMYGMGFDHSFGLWFVARWLKPDLMIESGAFKGHSTWVLRQAMPN 240
           LEEFVPIYETRPIKNNMYGMGFDHSFGLWFVARWLKPDLMIESGAFKGHSTWVLRQAMPN
Sbjct: 181 LEEFVPIYETRPIKNNMYGMGFDHSFGLWFVARWLKPDLMIESGAFKGHSTWVLRQAMPN 240

Query: 241 TKIISLSPRHPEKYLKKGPAYVDGNCTYLAGKDFIDFGSVDWGKLLRNHGISDLSRVLVF 300
           TKIISLSPRHPEKYLKKGPAYVDGNCTYLAGKDFIDFGSVDWGKLLRNHGISDLSRVLVF
Sbjct: 241 TKIISLSPRHPEKYLKKGPAYVDGNCTYLAGKDFIDFGSVDWGKLLRNHGISDLSRVLVF 300

Query: 301 FDDHQSELKRLKQASIVGFRHIIFEDNYDTGTGDHYSLRQICDQEHIRGGGHSCFWDSDE 360
           FDDHQSELKRLKQASIVGFRHIIFEDNYDTGTGDHYSLRQICDQEHIRGGGHSCFWDSDE
Sbjct: 301 FDDHQSELKRLKQASIVGFRHIIFEDNYDTGTGDHYSLRQICDQEHIRGGGHSCFWDSDE 360

Query: 361 ARLRSRRKSFWEKAVETDELCGKDDAWWGVRGYMRDNFNHSNKAISYKEHFQNSRLVESV 420
           ARLRSRRKSFWEKAVETDELCGKDDAWWGVRGYMRDNFNHSNKAISYKEHFQNSRLVESV
Sbjct: 361 ARLRSRRKSFWEKAVETDELCGKDDAWWGVRGYMRDNFNHSNKAISYKEHFQNSRLVESV 420

Query: 421 LDLYWELPPVAGPSLTHQTRYDPARASDPIIEDGRFGMFQRIGLARLDASVFNGYTQMSY 480
           LDLYWELPPVAGPSLTHQTRYDPARASDPIIEDGRFGMFQRIGLARLDASVFNGYTQMSY
Sbjct: 421 LDLYWELPPVAGPSLTHQTRYDPARASDPIIEDGRFGMFQRIGLARLDASVFNGYTQMSY 480

Query: 481 VQISGSMLSREDA 493
           VQISGSMLSREDA
Sbjct: 481 VQISGSMLSREDA 493



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,358,605
Number of extensions: 596179
Number of successful extensions: 1023
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1021
Number of HSP's successfully gapped: 2
Length of query: 493
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 388
Effective length of database: 11,553,331
Effective search space: 4482692428
Effective search space used: 4482692428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)