Os01g0373400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os01g0373400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.8 | 0.293 | 9.48 | 0.101 | 0.276 | 0.0429 | 0.603 | 4.62 | -0.144 | 14.2 | 30.04 | 2608 | -- | -- |
| 40.74 | 0.297 | 9.58 | -0.741 | 0.248 | 0.655 | 0.518 | -- | -0.158 | 13.8 | 30.34 | 3905 | -- | -- |
| 40.03 | 0.295 | 9.48 | 0.103 | 0.275 | 0.0127 | -- | 4.81 | -0.16 | 14.5 | 30.4 | 2608 | -- | -- |
| 41.73 | 0.301 | 9.58 | -0.729 | 0.257 | 0.694 | -- | -- | -0.144 | 14 | 30.3 | 3348 | -- | -- |
| 43.18 | 0.306 | 9.49 | 0.0229 | -- | 0.0321 | -- | 5.59 | -0.173 | -- | 30.3 | 2014 | -- | -- |
| 54.04 | 0.345 | 9.61 | -0.595 | 0.208 | -- | 0.439 | -- | -0.276 | 14.4 | -- | -- | -- | -- |
| 54.72 | 0.346 | 9.61 | -0.583 | 0.212 | -- | -- | -- | -0.273 | 14.7 | -- | -- | -- | -- |
| 44.48 | 0.311 | 9.6 | -0.802 | -- | 0.565 | -- | -- | -0.307 | -- | 28.3 | 4688 | -- | -- |
| 55.3 | 0.346 | 9.56 | -- | 0.268 | 0.538 | -- | -- | -0.0975 | 14.3 | 30.7 | 3307 | -- | -- |
| 57.33 | 0.354 | 9.61 | -0.592 | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
| 63.69 | 0.373 | 9.59 | -- | 0.223 | -- | -- | -- | -0.208 | 14.8 | -- | -- | -- | -- |
| 58.83 | 0.357 | 9.57 | -- | -- | 0.423 | -- | -- | -0.118 | -- | 30.8 | 4703 | -- | -- |
| 66.58 | 0.381 | 9.59 | -- | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 3 | 38.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 4 | 38.17 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 10 | 38.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 29 | 38.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 30 | 38.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 32 | 38.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 44 | 38.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 56 | 38.44 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 62 | 38.46 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 65 | 38.47 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 70 | 38.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 76 | 38.61 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 79 | 38.63 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 95 | 38.66 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 98 | 38.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 99 | 38.69 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 112 | 38.72 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 114 | 38.73 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 122 | 38.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 134 | 38.80 | temperature | 30 | 1440 | > th | dose independent | sin | 6 | NA |
| 139 | 38.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 140 | 38.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 160 | 38.83 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 163 | 38.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 166 | 38.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 181 | 38.95 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 13 |
| 184 | 38.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 185 | 38.96 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 209 | 38.97 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 216 | 39.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 228 | 39.02 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 262 | 39.07 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 267 | 39.09 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 292 | 39.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 312 | 39.15 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 405 | 39.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 444 | 39.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 467 | 39.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 504 | 39.41 | temperature | 25 | 1440 | > th | dose dependent | sin | 7 | NA |
| 559 | 39.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 563 | 39.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 643 | 39.56 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 777 | 39.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 827 | 39.63 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 862 | 39.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 874 | 39.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 899 | 39.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 923 | 39.69 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |