BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0373400 Os01g0373400|AK110973
         (376 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47680.1  | chr3:17577483-17578391 REVERSE LENGTH=303           64   2e-10
AT5G41220.1  | chr5:16494560-16496969 REVERSE LENGTH=591           52   4e-07

>AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303
          Length = 302

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 15/164 (9%)

Query: 139 MSPLNQAHNGSSPPEVEILHGNDSVRTEK----RIMWTPDEDVRVMSAWLEHSTDFTCGA 194
           ++   +AHN  + P  + +  N +  T K    R  W+  ED+ ++SAWL  S D   G 
Sbjct: 14  LTSQQEAHNLETNPYDDDVSPNQAAHTPKVKRERRKWSAGEDLVLVSAWLNTSKDAVIGN 73

Query: 195 DKGGVQYWGEVVETYNKTTPPL---RRRNAKQCKDRWNKINKWTDLFECAYAKARRVFTS 251
           ++ G  +W  +   Y   +P L    +R     K RW KIN+    F  +Y  A +  +S
Sbjct: 74  EQKGYAFWSRIAAYYG-ASPKLNGVEKRETGHIKQRWTKINEGVGKFVGSYEAATKQKSS 132

Query: 252 GYSAEMWLDAAHKFYVDDNKECKDVVGPYMLTEVWKICRDVPKW 295
           G + +  +  AH+ Y  ++       G + L   W++ R   KW
Sbjct: 133 GQNDDDVVALAHEIYNSEH-------GKFTLEHAWRVLRFEQKW 169



>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
          Length = 590

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 157 LHGNDSVRTEKRIMWTPDEDVRVMSAWLEHSTDFTCGADKGGVQYWGEVVETYNKTTPP- 215
           L  N + R + R  W+  ED  ++SAWL  S D     +     +W  +   +N +    
Sbjct: 259 LVQNTTDRRKHRRKWSRAEDAILISAWLNTSKDPIVDNEHKACAFWKRIGAYFNNSASLA 318

Query: 216 -LRRRNAKQCKDRWNKINKWTDLFECAYAKARRVFTSGYSAEMWLDAAHKFYVDDNKECK 274
            L +R    CK RW+K+N     F   Y +A    +SG S +     A++ Y ++ K   
Sbjct: 319 NLPKREPSHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAYQVYTNNYK--- 375

Query: 275 DVVGPYMLTEVWKICRDVPKW 295
                + L   W+  R   KW
Sbjct: 376 ---SNFTLEHAWRELRHSKKW 393



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,485,151
Number of extensions: 368722
Number of successful extensions: 894
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 891
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 276
Effective length of database: 8,364,969
Effective search space: 2308731444
Effective search space used: 2308731444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)