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Os01g0322300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Inorganic pyrophosphatase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0188) R2 : 0.323
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.01 (0.0683) R2dE : 0.389 R2E : 0.253
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.241 (0.0428) R2dN8 : 0.0697 R2N8 : -0.066
σ : 0.344
deviance : 54.68
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.505
memory length : 14284
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.83 0.328 10.1 0.46 0.336 1.06 -0.0646 0.887 -0.136 2.77 1.5 5794 -- --
48.02 0.323 10.2 0.297 0.356 1.14 0.0835 -- -0.183 2.63 1.51 8701 -- --
48.84 0.325 10.1 0.462 0.336 1.06 -- 0.89 -0.136 2.75 1.501 5794 -- --
47.95 0.323 10.2 0.291 0.37 1.16 -- -- -0.193 2.8 1.5 8697 -- --
53.45 0.341 10.1 0.478 -- 1.05 -- 0.91 -0.136 -- 1.5 5701 -- --
67.8 0.386 10.1 0.479 0.338 -- 0.0159 -- 0.0564 3.04 -- -- -- --
67.8 0.386 10.1 0.478 0.338 -- -- -- 0.0563 3.04 -- -- -- --
53.45 0.34 10.2 0.369 -- 1.05 -- -- -0.179 -- 1.57 9964 -- --
50.35 0.33 10.2 -- 0.37 1.19 -- -- -0.194 2.78 1.51 8697 -- --
74.35 0.403 10.1 0.493 -- -- -- -- 0.065 -- -- -- -- --
73.83 0.402 10.1 -- 0.348 -- -- -- 0.00299 3.05 -- -- -- --
54.68 0.344 10.2 -- -- 1.01 -- -- -0.241 -- 1.505 14284 -- --
80.75 0.419 10.1 -- -- -- -- -- 0.0104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.13 wind 3 43200 < th dose independent rect. 2 2
4 44.27 wind 3 43200 > th dose independent rect. 3 4
10 44.55 wind 3 43200 > th dose independent rect. 3 1
11 44.56 wind 3 43200 < th dose independent rect. 2 7
13 44.59 radiation 40 14400 < th dose dependent rect. 18 8
17 44.65 wind 3 43200 > th dose independent rect. 2 7
26 44.74 radiation 40 14400 < th dose dependent rect. 18 10
56 45.04 radiation 10 14400 < th dose dependent rect. 18 3
137 45.70 wind 1 43200 > th dose dependent rect. 3 4
138 45.70 wind 3 43200 < th dose dependent rect. 3 8
144 45.78 wind 5 43200 < th dose dependent rect. 3 4
166 45.98 wind 3 43200 < th dose independent sin 7 NA
168 45.98 humidity 90 14400 > th dose dependent rect. 5 5
170 45.99 radiation 1 14400 > th dose independent rect. 18 11
172 45.99 humidity 90 14400 > th dose dependent rect. 5 23
184 46.08 wind 3 43200 > th dose independent sin 7 NA
202 46.16 wind 5 43200 < th dose dependent rect. 24 10
203 46.16 wind 5 43200 < th dose dependent rect. 24 12
205 46.17 wind 9 43200 < th dose dependent rect. 3 4
210 46.18 humidity 90 14400 > th dose dependent rect. 24 22
212 46.19 wind 5 43200 < th dose dependent rect. 24 7
228 46.23 humidity 90 14400 > th dose dependent rect. 22 23
231 46.24 humidity 90 14400 > th dose dependent rect. 9 23
232 46.25 humidity 90 14400 > th dose dependent rect. 12 23
233 46.25 humidity 90 14400 > th dose dependent rect. 19 23
240 46.27 humidity 90 14400 > th dose dependent no NA NA
264 46.31 wind 1 43200 > th dose dependent rect. 3 7
327 46.42 humidity 90 14400 > th dose dependent rect. 9 19
346 46.46 wind 1 43200 > th dose dependent rect. 3 10
347 46.46 humidity 90 14400 > th dose dependent rect. 13 14
359 46.48 humidity 90 14400 > th dose dependent rect. 11 17
376 46.51 wind 1 43200 > th dose dependent rect. 24 10
378 46.51 humidity 90 14400 > th dose dependent rect. 5 11
385 46.52 wind 1 43200 > th dose dependent rect. 24 13
390 46.53 humidity 90 14400 > th dose dependent sin 2 NA
402 46.55 radiation 1 14400 < th dose independent rect. 18 11
403 46.55 wind 9 43200 < th dose dependent rect. 3 10
410 46.56 wind 9 43200 < th dose dependent rect. 3 7
417 46.57 wind 9 43200 < th dose dependent rect. 24 13
432 46.59 wind 1 43200 > th dose dependent rect. 24 7
439 46.60 radiation 20 4320 > th dose dependent rect. 6 2
471 46.63 wind 9 43200 < th dose dependent rect. 24 10
522 46.71 humidity 80 43200 > th dose independent rect. 4 1
532 46.72 radiation 1 14400 > th dose independent rect. 18 1
563 46.75 wind 5 43200 < th dose dependent sin 6 NA
572 46.76 humidity 80 43200 < th dose independent rect. 3 2
574 46.76 humidity 90 14400 > th dose dependent sin 14 NA
595 46.79 humidity 90 14400 > th dose independent rect. 24 20
630 46.85 humidity 90 14400 > th dose independent rect. 12 19
631 46.85 humidity 90 14400 > th dose independent rect. 9 22
674 46.90 wind 1 43200 > th dose dependent sin 6 NA
704 46.94 humidity 80 43200 < th dose independent rect. 24 6
707 46.94 wind 5 43200 < th dose dependent rect. 3 1
740 46.98 radiation 1 14400 < th dose independent rect. 18 7
765 47.01 humidity 90 14400 > th dose independent rect. 12 16
770 47.02 radiation 1 14400 < th dose independent rect. 18 3
782 47.03 radiation 1 14400 < th dose independent rect. 18 1
846 47.10 humidity 90 14400 > th dose independent rect. 19 21
871 47.12 humidity 90 14400 > th dose independent rect. 9 19
874 47.12 humidity 90 14400 < th dose independent rect. 6 22
892 47.14 humidity 90 14400 > th dose independent rect. 5 23
918 47.17 humidity 90 14400 > th dose independent no NA NA
995 47.24 humidity 90 14400 < th dose independent rect. 24 19
996 47.24 humidity 90 14400 < th dose independent rect. 12 21