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Os01g0292700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Prefoldin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0306) R2 : 0.869
β1 : -2.62 (0.112) R2dD : 0.164 R2D : 0.15
β2 : 2.42 (0.122) R2dC : 0.299 R2C : 0.588
β3 : 1.29 (0.103) R2dE : 0.121 R2E : 0.417
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0164 (0.0657) R2dN8 : 2.42e-05 R2N8 : -0.000612
σ : 0.572
deviance : 150.69
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C
peak time of C : 2.52
E
wheather : radiation
threshold : 18.04
memory length : 74
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.27 0.552 10.9 -2.59 2.43 1.31 3 -2.1 0.00343 2.48 20 79 -- --
147.19 0.565 10.9 -2.62 2.2 1.47 1.28 -- 0.0386 3.01 11.65 66 -- --
150.81 0.572 10.9 -2.6 2.39 1.34 -- -0.131 -0.00973 2.48 20 79 -- --
150.69 0.572 10.9 -2.62 2.42 1.29 -- -- -0.0164 2.52 18.04 74 -- --
207.85 0.671 10.9 -2.81 -- 2.8 -- -0.562 -0.113 -- 6.009 239 -- --
174.96 0.62 11 -2.64 3.63 -- 0.992 -- -0.0992 1.84 -- -- -- --
178.78 0.626 11 -2.67 3.63 -- -- -- -0.105 1.83 -- -- -- --
196.3 0.653 10.9 -2.53 -- 3.01 -- -- 0.0028 -- 5.929 248 -- --
329.1 0.845 10.9 -- 2.29 1.48 -- -- 0.284 2.52 23.76 79 -- --
976.35 1.46 10.9 -2.52 -- -- -- -- -0.0218 -- -- -- -- --
366.22 0.895 10.9 -- 3.58 -- -- -- 0.192 1.81 -- -- -- --
359.98 0.884 10.9 -- -- 2.98 -- -- 0.298 -- 3.48 246 -- --
1143.59 1.58 10.9 -- -- -- -- -- 0.258 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.45 radiation 20 90 < th dose dependent rect. 7 23
3 138.19 radiation 20 90 < th dose dependent rect. 15 23
4 138.44 radiation 20 90 < th dose dependent rect. 17 22
6 139.14 temperature 30 720 < th dose dependent rect. 19 12
7 139.34 temperature 30 720 < th dose dependent rect. 16 16
10 139.45 radiation 20 90 < th dose dependent no NA NA
20 140.05 radiation 20 90 < th dose dependent rect. 11 23
23 140.27 temperature 30 720 < th dose dependent sin 12 NA
29 140.53 radiation 20 90 < th dose dependent rect. 13 23
41 141.11 radiation 10 90 < th dose independent rect. 7 23
44 141.26 radiation 20 90 < th dose dependent rect. 1 23
74 142.35 temperature 30 720 < th dose dependent rect. 20 6
86 142.55 radiation 20 90 < th dose independent rect. 8 14
95 142.69 temperature 10 720 > th dose dependent rect. 17 11
113 142.99 radiation 30 90 < th dose dependent rect. 8 14
142 143.26 radiation 10 90 < th dose dependent sin 23 NA
205 144.10 radiation 40 270 < th dose independent rect. 9 11
219 144.31 radiation 10 10 < th dose dependent rect. 4 18
260 144.80 radiation 20 90 < th dose dependent rect. 17 18
265 144.90 temperature 30 720 < th dose dependent rect. 5 2
294 145.11 temperature 25 720 < th dose dependent rect. 23 2
310 145.28 radiation 20 90 < th dose dependent rect. 23 23
315 145.37 radiation 10 90 < th dose independent rect. 17 22
327 145.51 temperature 10 720 > th dose dependent rect. 23 5
334 145.60 radiation 40 270 < th dose dependent rect. 9 10
372 145.94 radiation 10 90 < th dose independent sin 22 NA
388 146.07 radiation 10 30 < th dose dependent rect. 21 23
398 146.18 radiation 20 90 < th dose dependent rect. 3 20
432 146.44 temperature 10 720 > th dose dependent rect. 7 22
446 146.52 radiation 20 90 < th dose independent rect. 11 11
466 146.66 radiation 10 10 < th dose dependent rect. 1 23
503 146.81 wind 9 43200 > th dose dependent rect. 18 9
526 146.97 wind 9 43200 > th dose dependent rect. 18 6
528 146.98 temperature 10 720 > th dose dependent rect. 21 7
539 147.04 radiation 10 10 < th dose dependent rect. 3 23
540 147.05 radiation 10 90 < th dose independent rect. 1 23
581 147.30 radiation 10 90 < th dose independent no NA NA
591 147.34 wind 9 43200 > th dose independent rect. 18 9
616 147.44 radiation 30 90 < th dose dependent rect. 11 11
649 147.61 wind 9 43200 > th dose independent rect. 18 6
663 147.64 radiation 40 270 < th dose independent rect. 24 11
693 147.80 wind 9 43200 < th dose independent rect. 18 6
707 147.85 wind 9 43200 > th dose dependent rect. 18 13
717 147.89 temperature 10 720 > th dose dependent rect. 24 20
723 147.92 temperature 10 720 > th dose dependent rect. 17 2
735 147.96 radiation 10 90 < th dose independent rect. 11 23
770 148.14 wind 9 43200 < th dose independent rect. 18 9
775 148.16 radiation 10 90 < th dose independent rect. 13 23
777 148.16 radiation 10 30 < th dose dependent rect. 4 16
792 148.20 radiation 10 90 < th dose independent rect. 3 20
827 148.36 temperature 10 270 > th dose dependent rect. 24 11
839 148.42 radiation 40 270 < th dose independent rect. 24 22
844 148.45 temperature 15 720 > th dose dependent rect. 16 22
866 148.58 radiation 40 720 < th dose independent rect. 17 17
867 148.58 temperature 25 720 < th dose dependent no NA NA
902 148.71 wind 9 43200 > th dose independent rect. 18 13
906 148.73 temperature 10 720 > th dose dependent rect. 21 23