BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0292700 Os01g0292700|J065063M02
(268 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0292700 Prefoldin domain containing protein 447 e-126
Os05g0135900 Spectrin repeat containing protein 138 4e-33
>Os01g0292700 Prefoldin domain containing protein
Length = 268
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/268 (87%), Positives = 234/268 (87%)
Query: 1 MPISERATTTPSSSYYSLELDPLLSDLAEKKLSLRRSLAWLDAELKDAKIKLASKEQLLA 60
MPISERATTTPSSSYYSLELDPLLSDLAEKKLSLRRSLAWLDAELKDAKIKLASKEQLLA
Sbjct: 1 MPISERATTTPSSSYYSLELDPLLSDLAEKKLSLRRSLAWLDAELKDAKIKLASKEQLLA 60
Query: 61 QESENRKKFAESRARSMEEEVKKLHKCLQDKDEQLRTSICSTEQQYLSSYKLDILRSQIS 120
QESENRKKFAESRARSMEEEVKKLHKCLQDKDEQLRTSICSTEQQYLSSYKLDILRSQIS
Sbjct: 61 QESENRKKFAESRARSMEEEVKKLHKCLQDKDEQLRTSICSTEQQYLSSYKLDILRSQIS 120
Query: 121 VXXXXXXXXXXXXXXXRLQCLSLSGGHEKINSLGECELRVKKVEEQLDLVQKFLEAKELS 180
V RLQCLSLSGGHEKINSLGECELRVKKVEEQLDLVQKFLEAKELS
Sbjct: 121 VAQATAEASAESAMLARLQCLSLSGGHEKINSLGECELRVKKVEEQLDLVQKFLEAKELS 180
Query: 181 QLEKNQMXXXXXXXXXXXXXXXXXXXSRAQLRKLHKMVERRDKPLKKLQSRLPLKQQTAC 240
QLEKNQM SRAQLRKLHKMVERRDKPLKKLQSRLPLKQQTAC
Sbjct: 181 QLEKNQMTTVHELKKKVLKLECTLKVSRAQLRKLHKMVERRDKPLKKLQSRLPLKQQTAC 240
Query: 241 DKQKLWESSGFRIIASMSILALAMLSKR 268
DKQKLWESSGFRIIASMSILALAMLSKR
Sbjct: 241 DKQKLWESSGFRIIASMSILALAMLSKR 268
>Os05g0135900 Spectrin repeat containing protein
Length = 344
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/164 (54%), Positives = 112/164 (68%), Gaps = 5/164 (3%)
Query: 19 ELDPLLSDLAEKKLSLRRSLAWLDAELKDAKIKLASKEQLLAQESENRKKFAESRARSME 78
+LDPLL DL EKKLS RR++ L AELKD + KLAS+EQL +ES+ R KFAE++ARSME
Sbjct: 17 DLDPLLKDLTEKKLSFRRNVVSLAAELKDVRNKLASQEQLFVRESQTR-KFAETKARSME 75
Query: 79 EEVKKLHKCLQDKDEQLRTSICSTEQQYLSSYKLDILRSQISVXXXXXXXXXXXXXXXRL 138
EE+ KL KCL DKDEQLR+S TEQ + ++LD LRS++SV +
Sbjct: 76 EEISKLQKCLNDKDEQLRSSTGCTEQYF---HELDDLRSKLSVTQATAEASAASAKSAQS 132
Query: 139 QCLS-LSGGHEKINSLGECELRVKKVEEQLDLVQKFLEAKELSQ 181
QCLS L +EK +SL E E RV K+ EQLD +QK LE++E SQ
Sbjct: 133 QCLSLLKELNEKDSSLKEHERRVNKLGEQLDHLQKDLESREYSQ 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.126 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,435,781
Number of extensions: 196354
Number of successful extensions: 750
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)