BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0292700 Os01g0292700|J065063M02
(268 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G26770.2 | chr5:9407981-9409735 REVERSE LENGTH=336 77 7e-15
AT1G09470.1 | chr1:3055391-3056931 REVERSE LENGTH=337 76 1e-14
AT3G05830.2 | chr3:1736796-1738565 FORWARD LENGTH=350 62 3e-10
>AT5G26770.2 | chr5:9407981-9409735 REVERSE LENGTH=336
Length = 335
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 5/163 (3%)
Query: 20 LDPLLSDLAEKKLSLRRSLAWLDAELKDAKIKLASKEQLLAQESENRKKFAESRARSMEE 79
+DPLL DL KK S RR++ + AELK + +L S+EQ +ES RK+ AE +A++ME
Sbjct: 9 VDPLLKDLDGKKESFRRNVVSMAAELKQVRGRLVSQEQFFVKESFCRKE-AEKKAKNMEM 67
Query: 80 EVKKLHKCLQDKDEQLRTSICSTEQQYLSSYKLDILRSQISVXXXXXXXXXXXXXXXRLQ 139
E+ KL K L+D++ +L S + E ++L ++D LRSQ+++ +LQ
Sbjct: 68 EICKLQKKLEDRNCELVASTSAAE-KFLE--EVDDLRSQLALTKDIAETSAASAQSAQLQ 124
Query: 140 CLSLSGG-HEKINSLGECELRVKKVEEQLDLVQKFLEAKELSQ 181
C L+ +K SL E E RV + QLD +Q+ L+ +E SQ
Sbjct: 125 CSVLTEQLDDKTRSLREHEDRVTHLGHQLDNLQRDLKTRECSQ 167
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 207 SRAQLRKLHKMVERRDKPLKKLQSRLPLKQ---QTACDKQKLWESSGFRIIASMSILALA 263
+R+Q RKL + ERRDK +K+L ++ KQ + +KQ W++SGF+I+ SMS+L L
Sbjct: 271 ARSQTRKLQRAGERRDKAIKELSDQITGKQLNESVSGEKQNFWDTSGFKIVVSMSMLILV 330
Query: 264 MLSKR 268
++SKR
Sbjct: 331 IISKR 335
>AT1G09470.1 | chr1:3055391-3056931 REVERSE LENGTH=337
Length = 336
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 5/164 (3%)
Query: 19 ELDPLLSDLAEKKLSLRRSLAWLDAELKDAKIKLASKEQLLAQESENRKKFAESRARSME 78
E DPLL DL+EKK S RR++ L ELK+A+ +LA +E+ ++E+ +R++ AE+R + ME
Sbjct: 9 EDDPLLKDLSEKKQSFRRNVVSLATELKEARTRLAEQERSCSKEAMSRQE-AETRVKRME 67
Query: 79 EEVKKLHKCLQDKDEQLRTSICSTEQQYLSSYKLDILRSQISVXXXXXXXXXXXXXXXRL 138
+E+ +L K L +K EQ+R S +TE+ +L ++SQ++
Sbjct: 68 DEMHELAKELNEKVEQIRASDVATEKFV---KELADIKSQLAATHATAEASALSAESAHS 124
Query: 139 QCLSLSGG-HEKINSLGECELRVKKVEEQLDLVQKFLEAKELSQ 181
C LS HE+ SL E E +V ++ EQL+ ++K L +E SQ
Sbjct: 125 HCRVLSKQLHERTGSLKEHEDQVTRLGEQLENLRKELRVRESSQ 168
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 207 SRAQLRKLHKMVERRDKPLKKLQSRLPLKQQTACD---KQKLWESSGFRIIASMSILALA 263
+R Q RKL KM ER D +++L+ +L K+Q D Q LW+ SGF+I+ SMS+L L
Sbjct: 272 TRIQTRKLQKMGERNDVAIQELKEQLAAKKQHEADHSSNQNLWDKSGFKIVVSMSMLILV 331
Query: 264 MLSKR 268
S+R
Sbjct: 332 AFSRR 336
>AT3G05830.2 | chr3:1736796-1738565 FORWARD LENGTH=350
Length = 349
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 5/163 (3%)
Query: 20 LDPLLSDLAEKKLSLRRSLAWLDAELKDAKIKLASKEQLLAQESENRKKFAESRARSMEE 79
+DPLL DL EKK S RR++ L ELK + +L S+EQ +E+ RK+ AE R ++ME
Sbjct: 9 VDPLLRDLDEKKESFRRNVVSLATELKQVRGRLVSQEQSFLKETITRKE-AEKRGKNMEM 67
Query: 80 EVKKLHKCLQDKDEQLRTSICSTEQQYLSSYKLDILRSQISVXXXXXXXXXXXXXXXRLQ 139
E+ KL K L++++ QL S S +++ +L+ R ++ ++Q
Sbjct: 68 EICKLQKRLEERNCQLEAS-ASAADKFIK--ELEEFRLKLDTTKQTAEASADSAQSTKIQ 124
Query: 140 CLSLSGG-HEKINSLGECELRVKKVEEQLDLVQKFLEAKELSQ 181
C L +K SL E E R+ ++ QLD +Q+ L +E S+
Sbjct: 125 CSMLKQQLDDKTRSLREQEDRMTQLGHQLDDLQRGLSLRECSE 167
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 16/78 (20%)
Query: 207 SRAQLRKLHKMV-------------ERRDKPLKKLQSRLPLKQQ---TACDKQKLWESSG 250
+R+Q RKL + ERRD +K+++ + KQ + DKQK W++SG
Sbjct: 272 ARSQTRKLQRFYCCCCFVMNGAQKGERRDMEIKEIRDLISEKQNLNNESWDKQKFWDNSG 331
Query: 251 FRIIASMSILALAMLSKR 268
F+I+ SMS+L L ++SKR
Sbjct: 332 FKIVVSMSMLMLVVVSKR 349
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.126 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,450,927
Number of extensions: 146156
Number of successful extensions: 943
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 941
Number of HSP's successfully gapped: 6
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)