Os01g0276400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Presenilin 2 (PS-2) (Fragment).
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Os01g0276400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Presenilin 2 (PS-2) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.23 | 0.346 | 8.31 | 0.916 | 0.29 | -1.03 | -0.209 | -0.692 | 0.22 | 7.67 | 79 | 1364 | -- | -- |
| 54.6 | 0.344 | 8.31 | 0.973 | 0.283 | -1.06 | -0.285 | -- | 0.233 | 7.23 | 79 | 1325 | -- | -- |
| 54.34 | 0.343 | 8.31 | 0.91 | 0.286 | -1.02 | -- | -0.714 | 0.22 | 7.62 | 79 | 1343 | -- | -- |
| 54.76 | 0.345 | 8.31 | 0.962 | 0.292 | -1.05 | -- | -- | 0.228 | 7.98 | 78 | 1373 | -- | -- |
| 57.2 | 0.352 | 8.32 | 0.912 | -- | -0.887 | -- | -0.812 | 0.221 | -- | 76.01 | 1144 | -- | -- |
| 68.83 | 0.389 | 8.32 | 0.919 | 0.266 | -- | -0.0941 | -- | 0.183 | 8.65 | -- | -- | -- | -- |
| 68.86 | 0.389 | 8.32 | 0.916 | 0.265 | -- | -- | -- | 0.183 | 8.8 | -- | -- | -- | -- |
| 57.8 | 0.354 | 8.32 | 0.983 | -- | -0.743 | -- | -- | 0.214 | -- | 76 | 899 | -- | -- |
| 78.14 | 0.412 | 8.31 | -- | 0.17 | -0.898 | -- | -- | 0.243 | 6.61 | 85 | 2410 | -- | -- |
| 72.85 | 0.399 | 8.33 | 0.916 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 90.98 | 0.446 | 8.34 | -- | 0.268 | -- | -- | -- | 0.0808 | 8.54 | -- | -- | -- | -- |
| 77.99 | 0.411 | 8.33 | -- | -- | -1.01 | -- | -- | 0.191 | -- | 83.76 | 2129 | -- | -- |
| 95.01 | 0.455 | 8.35 | -- | -- | -- | -- | -- | 0.0832 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.91 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 5 | 52.98 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 23 | 53.95 | humidity | 80 | 720 | < th | dose dependent | sin | 11 | NA |
| 49 | 54.46 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 62 | 54.59 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 21 |
| 74 | 54.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 123 | 54.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 155 | 55.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 186 | 55.14 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 212 | 55.18 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 233 | 55.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 234 | 55.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 269 | 55.32 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 276 | 55.33 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 374 | 55.68 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 418 | 55.81 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 425 | 55.82 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 504 | 55.98 | humidity | 50 | 1440 | > th | dose dependent | sin | 16 | NA |
| 518 | 56.00 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 3 |
| 546 | 56.05 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 9 |
| 592 | 56.10 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 603 | 56.13 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 17 |
| 672 | 56.22 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 694 | 56.25 | humidity | 70 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 848 | 56.37 | humidity | 80 | 720 | > th | dose independent | sin | 14 | NA |
| 985 | 56.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 21 |