BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0276400 Os01g0276400|AK106403
         (351 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0276400  Similar to Presenilin 2 (PS-2) (Fragment)           578   e-165
Os03g0603700  Peptidase A22A, presenilin family protein           165   4e-41

>Os01g0276400 Similar to Presenilin 2 (PS-2) (Fragment)
          Length = 351

 Score =  578 bits (1490), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 297/351 (84%), Positives = 297/351 (84%)

Query: 1   MRFSAFFVLFSMGGAIAAAVLRRLGAPLDAATALVLLFNASAVGVLSVFASAVPIVVRQG 60
           MRFSAFFVLFSMGGAIAAAVLRRLGAPLDAATALVLLFNASAVGVLSVFASAVPIVVRQG
Sbjct: 1   MRFSAFFVLFSMGGAIAAAVLRRLGAPLDAATALVLLFNASAVGVLSVFASAVPIVVRQG 60

Query: 61  YMVALAVIVAAWLSRLPEWTTWVMXXXXXXXXXXXXXXPRGPLRMLVELASSRDDELPAL 120
           YMVALAVIVAAWLSRLPEWTTWVM              PRGPLRMLVELASSRDDELPAL
Sbjct: 61  YMVALAVIVAAWLSRLPEWTTWVMLIALALYDLVAVLAPRGPLRMLVELASSRDDELPAL 120

Query: 121 VYESRPTVXXXXXXXXXXXXXXXVEMQPVADPGRSGGNQYDRVEQEDDSSRAVVEMRDVG 180
           VYESRPTV               VEMQPVADPGRSGGNQYDRVEQEDDSSRAVVEMRDVG
Sbjct: 121 VYESRPTVGPASGSSSYASAMGSVEMQPVADPGRSGGNQYDRVEQEDDSSRAVVEMRDVG 180

Query: 181 GSRSSIRERNLEREAPMAXXXXXXXXXXXXXXXXAVIQIEQHEEGETVPLVXXXXXXXXX 240
           GSRSSIRERNLEREAPMA                AVIQIEQHEEGETVPLV         
Sbjct: 181 GSRSSIRERNLEREAPMAVSVSGHSSNQGGSSQHAVIQIEQHEEGETVPLVSAASANNAA 240

Query: 241 PNEEHRENSSSDSGMEFEMFESTRGIKLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIIA 300
           PNEEHRENSSSDSGMEFEMFESTRGIKLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIIA
Sbjct: 241 PNEEHRENSSSDSGMEFEMFESTRGIKLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIIA 300

Query: 301 GLGCTLILLSICKHALPALPISILLGVTFYFLTRLLMEPFVVGSSTNLVMF 351
           GLGCTLILLSICKHALPALPISILLGVTFYFLTRLLMEPFVVGSSTNLVMF
Sbjct: 301 GLGCTLILLSICKHALPALPISILLGVTFYFLTRLLMEPFVVGSSTNLVMF 351



>Os03g0603700 Peptidase A22A, presenilin family protein
          Length = 459

 Score =  165 bits (418), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/317 (40%), Positives = 161/317 (50%), Gaps = 45/317 (14%)

Query: 53  VPIVVRQGYMVALAVIVAAWLSRLPEWTTWVMXXXXXXXXXXXXXXPRGPLRMLVELASS 112
           VPI + Q  +VA+AV+ A W + LPEWTTW +              P GPLR+L+ELA  
Sbjct: 170 VPIALHQAALVAIAVLTAFWFTLLPEWTTWALLVAMAVYDLAAVLLPGGPLRLLLELAIE 229

Query: 113 RDDELPALVYESRPTVXXXXXXXXXXXXXXXVEMQPVADPGRSGGN-----QYDRVEQED 167
           R++E+PALVY                      E +PV DP R G N     +  +   E 
Sbjct: 230 RNEEIPALVY----------------------EARPV-DP-RHGHNWRLWRERTQSGAEL 265

Query: 168 DSSRAVVEMRDVGGSR-----------SSIRERNLEREAPMAXXXXXXXXXXXXXXXXAV 216
           D++  V  + +V G+            S+IR       A  A                A 
Sbjct: 266 DANSTVEVLGEVLGTNLGASSAGNLGVSAIRSDERVGLAGDARNLRLGTSMPNLSSDSAS 325

Query: 217 IQIEQHEEGETVPL-VXXXXXXXXXPNEEH-RENSSSDSGMEFEMFESTRGIKLGLGDFI 274
            Q+E       + + V         P  E  R+    + G+      S+  IKLGLGDFI
Sbjct: 326 AQVEVLPASPEISVSVPEMRVPLIQPRPERTRDEEDDEDGIGLS---SSGAIKLGLGDFI 382

Query: 275 FYSVLVGRAAMYDLMTVYACYLAIIAGLGCTLILLSICKHALPALPISILLGVTFYFLTR 334
           FYSVLVGRAAMYD MTVYACYLAIIAGLG TL+LL+  + ALPALP+SI LGV FY LTR
Sbjct: 383 FYSVLVGRAAMYDYMTVYACYLAIIAGLGITLLLLAFYRKALPALPVSIALGVVFYVLTR 442

Query: 335 LLMEPFVVGSSTNLVMF 351
            L+E FV+  STNLVMF
Sbjct: 443 TLLETFVMQCSTNLVMF 459



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,430,849
Number of extensions: 315219
Number of successful extensions: 1089
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1087
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 249
Effective length of database: 11,709,973
Effective search space: 2915783277
Effective search space used: 2915783277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)