BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0276400 Os01g0276400|AK106403
         (351 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08700.1  | chr1:2769885-2771348 REVERSE LENGTH=454            295   3e-80
AT2G29900.1  | chr2:12749837-12751030 FORWARD LENGTH=398          145   3e-35

>AT1G08700.1 | chr1:2769885-2771348 REVERSE LENGTH=454
          Length = 453

 Score =  295 bits (754), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 174/366 (47%), Positives = 216/366 (59%), Gaps = 26/366 (7%)

Query: 1   MRFSAFFVLFSMGGAIAAAVLRRLGAPLDAATALVLLFNASAVGVLSVFASAVPIVVRQG 60
           MRFSAFFVL +MGGAI  ++++    P+D+ T  +LLFN + +G LSVFA  +PIV+RQ 
Sbjct: 99  MRFSAFFVLGTMGGAIFLSIIQHFSIPVDSITCFILLFNFTILGTLSVFAGGIPIVLRQC 158

Query: 61  YMVALAVIVAAWLSRLPEWTTWVMXXXXXXXXXXXXXXPRGPLRMLVELASSRDDELPAL 120
           YMV + ++VAAW ++LPEWTTW +              P GPL++LVELASSRD+ELPA+
Sbjct: 159 YMVVMGIVVAAWFTKLPEWTTWFILVALALYDLVAVLAPGGPLKLLVELASSRDEELPAM 218

Query: 121 VYESRPTVXX------------XXXXXXXXXXXXXVEMQPVADPGRSGGNQYDRVEQEDD 168
           VYE+RPTV                           VE+Q V +      NQ  R E   +
Sbjct: 219 VYEARPTVSSGNQRRNRGSSLRALVGGGGVSDSGSVELQAVRNHDV---NQLGR-ENSHN 274

Query: 169 SSRAVVEMRDVGGSRSSIRERN---LEREAPMAXXXXXXXXXXXXXXXXAVIQIEQHEEG 225
                + +RD+      I   +   LER +P+                  +   E   + 
Sbjct: 275 MDYNAIAVRDIDNVDDGIGNGSRGGLER-SPLVGSPSASEHSTSVGTRGNMEDRESVMDE 333

Query: 226 ETVPLVXXXXXXXXXPNEEHRENSSSDSGMEFEMFESTRGIKLGLGDFIFYSVLVGRAAM 285
           E  PLV           EE R    SD+ ++     S RGIKLGLGDFIFYSVLVGRAAM
Sbjct: 334 EMSPLVELMGWGDN--REEARGLEESDNVVDI----SNRGIKLGLGDFIFYSVLVGRAAM 387

Query: 286 YDLMTVYACYLAIIAGLGCTLILLSICKHALPALPISILLGVTFYFLTRLLMEPFVVGSS 345
           YDLMTVYACYLAII+GLGCTLILLS+   ALPALPISI+LGV FYFLTRLLMEPFVVG +
Sbjct: 388 YDLMTVYACYLAIISGLGCTLILLSVYNRALPALPISIMLGVVFYFLTRLLMEPFVVGVT 447

Query: 346 TNLVMF 351
           TNL+MF
Sbjct: 448 TNLMMF 453



>AT2G29900.1 | chr2:12749837-12751030 FORWARD LENGTH=398
          Length = 397

 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 88/108 (81%), Gaps = 2/108 (1%)

Query: 244 EHRENSSSDSGMEFEMFESTRGIKLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIIAGLG 303
           E  ENS  ++ +E     S+  IKLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIIAGLG
Sbjct: 292 EQAENS--ETFLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIIAGLG 349

Query: 304 CTLILLSICKHALPALPISILLGVTFYFLTRLLMEPFVVGSSTNLVMF 351
            TL+LLS+ + ALPALP+SI+LGV FYFL RLL+E FVV  S+NLVMF
Sbjct: 350 ITLMLLSVYQKALPALPVSIMLGVVFYFLARLLLEVFVVQCSSNLVMF 397




 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 85/128 (66%)

Query: 1   MRFSAFFVLFSMGGAIAAAVLRRLGAPLDAATALVLLFNASAVGVLSVFASAVPIVVRQG 60
           M FSAF VL ++GG I   ++ R   P+D+ T L+LLFN S VGV +VF S   I++ QG
Sbjct: 107 MGFSAFIVLGNLGGEILVLLIDRFRFPIDSITFLILLFNFSVVGVFAVFMSKFSILITQG 166

Query: 61  YMVALAVIVAAWLSRLPEWTTWVMXXXXXXXXXXXXXXPRGPLRMLVELASSRDDELPAL 120
           Y+V + V+VA + + LPEWTTWV+              P GPLR+LVE+A SRD+++PAL
Sbjct: 167 YLVWIGVLVAYFFTLLPEWTTWVLLVALALYDIAAVLLPVGPLRLLVEMAISRDEDIPAL 226

Query: 121 VYESRPTV 128
           VYE+RP +
Sbjct: 227 VYEARPVI 234



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,669,675
Number of extensions: 181299
Number of successful extensions: 455
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 4
Length of query: 351
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,364,969
Effective search space: 2099607219
Effective search space used: 2099607219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)