Os01g0260700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PUR-alpha/beta/gamma, DNA/RNA-binding family protein.
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Os01g0260700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PUR-alpha/beta/gamma, DNA/RNA-binding family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.12 | 0.254 | 12.7 | 0.458 | 1.21 | 0.509 | 0.144 | 0.394 | 0.098 | 17.2 | 20.5 | 1059 | -- | -- |
| 29.54 | 0.253 | 12.7 | 0.422 | 1.2 | 0.449 | 0.0574 | -- | 0.103 | 17.2 | 20.55 | 1130 | -- | -- |
| 29.16 | 0.252 | 12.7 | 0.459 | 1.21 | 0.504 | -- | 0.371 | 0.0948 | 17.2 | 20.5 | 1058 | -- | -- |
| 29.49 | 0.253 | 12.7 | 0.396 | 1.21 | 0.455 | -- | -- | 0.0817 | 17.2 | 20.5 | 1059 | -- | -- |
| 97.06 | 0.459 | 12.7 | 0.413 | -- | 0.693 | -- | 0.645 | 0.0502 | -- | 19.9 | 346 | -- | -- |
| 34.8 | 0.277 | 12.7 | 0.572 | 1.2 | -- | 0.247 | -- | 0.185 | 17.4 | -- | -- | -- | -- |
| 34.95 | 0.277 | 12.7 | 0.571 | 1.2 | -- | -- | -- | 0.186 | 17.4 | -- | -- | -- | -- |
| 60.24 | 0.361 | 12.7 | 0.308 | -- | 0.84 | -- | -- | -0.00233 | -- | 26.4 | 307 | -- | -- |
| 31.62 | 0.262 | 12.8 | -- | 1.19 | 0.6 | -- | -- | -0.0117 | 17.3 | 20.53 | 2655 | -- | -- |
| 109.84 | 0.49 | 12.7 | 0.531 | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
| 43.56 | 0.309 | 12.7 | -- | 1.19 | -- | -- | -- | 0.122 | 17.4 | -- | -- | -- | -- |
| 62.31 | 0.368 | 12.8 | -- | -- | 0.875 | -- | -- | -0.11 | -- | 26.3 | 317 | -- | -- |
| 117.27 | 0.505 | 12.7 | -- | -- | -- | -- | -- | 0.0976 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 2 | 25.03 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 5 | 25.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 8 | 25.50 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 10 | 25.53 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 20 | 25.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 65 | 26.64 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 85 | 26.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 118 | 27.06 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 128 | 27.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 169 | 27.48 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 178 | 27.55 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 198 | 27.68 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 220 | 27.79 | temperature | 30.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 229 | 27.86 | temperature | 10.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 252 | 27.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 257 | 27.96 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 258 | 27.96 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 314 | 28.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 322 | 28.21 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 324 | 28.21 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 4 |
| 336 | 28.24 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 4 |
| 340 | 28.26 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 347 | 28.28 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 400 | 28.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 11 |
| 405 | 28.45 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 413 | 28.46 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 414 | 28.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 416 | 28.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 424 | 28.50 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 470 | 28.61 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 482 | 28.63 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 487 | 28.65 | wind | 7.0 | 30 | < th | dose independent | rect. | 8 | 20 |
| 493 | 28.66 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 536 | 28.74 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 545 | 28.77 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 562 | 28.81 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 576 | 28.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 578 | 28.83 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 579 | 28.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 582 | 28.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 583 | 28.83 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 585 | 28.83 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 590 | 28.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 591 | 28.83 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 608 | 28.84 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 614 | 28.85 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 623 | 28.86 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 20 |
| 632 | 28.87 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 638 | 28.88 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 654 | 28.91 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 677 | 28.95 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 19 |
| 691 | 28.97 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 703 | 28.99 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 4 |
| 722 | 29.00 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 745 | 29.02 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 765 | 29.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 767 | 29.04 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 4 |
| 773 | 29.04 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 779 | 29.05 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 783 | 29.05 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 786 | 29.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 792 | 29.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 811 | 29.07 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 816 | 29.07 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 831 | 29.09 | radiation | 30.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 847 | 29.10 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 851 | 29.10 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 4 |
| 856 | 29.10 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 859 | 29.10 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 4 |
| 864 | 29.10 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 4 |
| 866 | 29.10 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 872 | 29.10 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 20 |
| 877 | 29.11 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 899 | 29.12 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 902 | 29.12 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 935 | 29.15 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 4 |
| 936 | 29.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 944 | 29.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 977 | 29.18 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 20 |
| 981 | 29.18 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 20 |
| 999 | 29.20 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 2 |