BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0260700 Os01g0260700|J013050F24
         (298 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0260700  PUR-alpha/beta/gamma, DNA/RNA-binding family p...   549   e-157

>Os01g0260700 PUR-alpha/beta/gamma, DNA/RNA-binding family protein
          Length = 298

 Score =  549 bits (1415), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 34  DVELVSKTLQFEHKLFYFDYYIRTDERDAFSKELRLDTKVFYFDIGENKRGRFLKVSEAS 93
           DVELVSKTLQFEHKLFYFDYYIRTDERDAFSKELRLDTKVFYFDIGENKRGRFLKVSEAS
Sbjct: 34  DVELVSKTLQFEHKLFYFDYYIRTDERDAFSKELRLDTKVFYFDIGENKRGRFLKVSEAS 93

Query: 94  VNRNRSTIIVPAGSSGEEGWEAFRNVLLEINNEASRLYVLPNHPNQVQETIPFFDIFMKS 153
           VNRNRSTIIVPAGSSGEEGWEAFRNVLLEINNEASRLYVLPNHPNQVQETIPFFDIFMKS
Sbjct: 94  VNRNRSTIIVPAGSSGEEGWEAFRNVLLEINNEASRLYVLPNHPNQVQETIPFFDIFMKS 153

Query: 154 QMTSSLNSCHCIWQQHLEPPERLPGLSDDVGAGFIAGHGSQSASGPEVDVERLVDLPPQE 213
           QMTSSLNSCHCIWQQHLEPPERLPGLSDDVGAGFIAGHGSQSASGPEVDVERLVDLPPQE
Sbjct: 154 QMTSSLNSCHCIWQQHLEPPERLPGLSDDVGAGFIAGHGSQSASGPEVDVERLVDLPPQE 213

Query: 214 EISGMGMSKVIRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGH 273
           EISGMGMSKVIRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGH
Sbjct: 214 EISGMGMSKVIRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGH 273

Query: 274 FVDIMKDRLEGMTGANVRTVESSQR 298
           FVDIMKDRLEGMTGANVRTVESSQR
Sbjct: 274 FVDIMKDRLEGMTGANVRTVESSQR 298



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,844,059
Number of extensions: 381712
Number of successful extensions: 903
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 198
Effective length of database: 11,814,401
Effective search space: 2339251398
Effective search space used: 2339251398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)