BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0260700 Os01g0260700|J013050F24
         (298 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32080.1  | chr2:13642716-13644036 REVERSE LENGTH=297          314   3e-86

>AT2G32080.1 | chr2:13642716-13644036 REVERSE LENGTH=297
          Length = 296

 Score =  314 bits (805), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 171/303 (56%), Positives = 200/303 (66%), Gaps = 72/303 (23%)

Query: 34  DVELVSKTLQFEHKLFYFD--------------------------------------YYI 55
           DVELVSKTLQ EHKLFYFD                                      YY+
Sbjct: 28  DVELVSKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYV 87

Query: 56  RTDERDAFSKELRLDTKVFYFDIGENKRGRFLKVSEASVNRNRSTIIVPAGSSGEEGWEA 115
            ++E + FSKEL+LD+KVFYFDIGEN+RGRFLKVSEASV+RNRSTIIVPAGSS +EGW A
Sbjct: 88  NSEEHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSPDEGWAA 147

Query: 116 FRNVLLEINNEASRLYVLPNHPNQVQETIPFFDIFMKSQMTSSLNSCHCIWQQHLEPPER 175
           FRN+L EI+ EAS L+V+PN                                  ++P + 
Sbjct: 148 FRNILAEIH-EASGLFVMPNQ---------------------------------VKPSDG 173

Query: 176 LPGLSDDVGAGFIAGHGSQSASGPEVDVERLVDLPPQEEISGMGMSKVIRADQKRFFFDL 235
              L DDVGAGFI GHGSQ  S  E +V+R +D P QEE    G+SKVIRADQKRFFFDL
Sbjct: 174 QEHLVDDVGAGFIPGHGSQQPSSSEHNVDRTIDSPGQEETGMTGVSKVIRADQKRFFFDL 233

Query: 236 GSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGHFVDIMKDRLEGMTGANVRTVES 295
           G+NNRGH+LRISEVAG+DRSSIILPLSGLKQFHE++GHFV+I KD++EGMTGANVRTV+ 
Sbjct: 234 GNNNRGHFLRISEVAGSDRSSIILPLSGLKQFHEVIGHFVEITKDKIEGMTGANVRTVDP 293

Query: 296 SQR 298
            QR
Sbjct: 294 PQR 296



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,755,656
Number of extensions: 249242
Number of successful extensions: 587
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 4
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)