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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0253800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.46 (0.235) R2 : 0.141
β1 : 6.89 (1.4) R2dD : 2.48 R2D : -3.1
β2 : 0.655 (0.138) R2dC : 0.0431 R2C : -1.1
β3 : -92.1 (20.9) R2dE : 79.3 R2E : -81.1
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 559 (126) R2dD*E : 80.7 R2D*E : -79.4
γ1 : 0.474 (0.114) R2dN8 : 0.0452 R2N8 : -0.885
σ : 0.994
deviance : 455.46
__
_____
C
peak time of C : 19.5
E
wheather : atmosphere
threshold : 994.7
memory length : 657
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
451.12 0.998 2.32 7.95 0.674 -94.6 1.8 571 0.454 19.7 994.9 698 -- --
472.49 1.02 3.5 0.848 0.633 -1.44 1.68 -- 0.448 19.9 994.9 698 -- --
455.46 0.994 2.46 6.89 0.655 -92.1 -- 559 0.474 19.5 994.7 657 -- --
477.91 1.02 3.5 0.818 0.661 -1.38 -- -- 0.447 19.5 995.6 342 -- --
477.42 1.02 2.45 6.99 -- -95 -- 577 0.458 -- 994.5 653 -- --
474.59 1.02 3.5 0.838 0.622 -- 1.65 -- 0.452 19.9 -- -- -- --
482.42 1.03 3.5 0.796 0.628 -- -- -- 0.455 19.6 -- -- -- --
501.2 1.04 3.49 0.801 -- -1.04 -- -- 0.435 -- 995.7 350 -- --
495.56 1.04 3.52 -- 0.646 -1.25 -- -- 0.356 19.7 995.6 340 -- --
503.58 1.05 3.48 0.787 -- -- -- -- 0.445 -- -- -- -- --
499.12 1.05 3.52 -- 0.621 -- -- -- 0.366 19.7 -- -- -- --
517.79 1.06 3.5 -- -- -1.07 -- -- 0.351 -- 995.6 157 -- --
519.92 1.06 3.5 -- -- -- -- -- 0.358 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 439.39 wind 1 14400 < th dose dependent rect. 1 3
2 439.44 wind 1 43200 < th dose independent rect. 12 1
3 440.37 wind 9 43200 > th dose independent rect. 15 1
4 440.45 atmosphere 1010 43200 < th dose independent rect. 3 1
7 440.54 atmosphere 1010 43200 > th dose independent rect. 3 1
8 440.54 atmosphere 1010 43200 > th dose independent rect. 5 1
9 440.54 atmosphere 1010 43200 > th dose independent rect. 3 3
22 440.88 atmosphere 1010 43200 > th dose independent rect. 15 2
30 440.95 atmosphere 1010 43200 > th dose dependent rect. 23 1
48 441.09 wind 1 43200 > th dose independent rect. 12 1
63 441.18 atmosphere 1010 43200 < th dose independent rect. 15 1
77 441.27 atmosphere 1010 43200 > th dose independent rect. 3 16
128 441.44 atmosphere 1010 43200 < th dose independent rect. 3 16
149 441.48 atmosphere 1010 43200 > th dose independent rect. 3 20
155 441.50 atmosphere 1010 43200 > th dose independent rect. 22 1
182 441.55 wind 1 43200 < th dose independent rect. 10 4
200 441.58 atmosphere 1010 43200 < th dose independent rect. 23 9
206 441.59 atmosphere 1010 43200 > th dose independent sin 1 NA
227 441.60 atmosphere 1010 43200 < th dose independent rect. 2 22
235 441.62 atmosphere 1010 43200 < th dose independent sin 5 NA
238 441.62 atmosphere 1010 43200 > th dose independent rect. 14 9
265 441.63 atmosphere 1010 43200 < th dose independent rect. 22 21
289 441.65 atmosphere 1010 43200 < th dose independent rect. 14 18
292 441.65 atmosphere 1010 43200 < th dose independent rect. 14 21
321 441.67 atmosphere 1010 43200 > th dose dependent rect. 8 16
345 441.69 atmosphere 1010 43200 > th dose independent rect. 22 21
384 441.71 atmosphere 1010 43200 > th dose dependent rect. 9 1
414 441.73 atmosphere 1010 43200 > th dose independent rect. 14 19
417 441.73 atmosphere 1010 43200 > th dose independent rect. 14 21
440 441.75 atmosphere 1010 43200 < th dose independent rect. 18 1
464 441.76 atmosphere 1010 43200 < th dose independent rect. 10 1
482 441.76 atmosphere 1010 43200 < th dose independent rect. 10 22
492 441.77 atmosphere 1010 43200 < th dose independent no NA NA
533 441.78 atmosphere 1010 43200 < th dose independent rect. 7 23
536 441.78 atmosphere 1010 43200 < th dose independent rect. 18 23
539 441.78 temperature 25 43200 > th dose dependent rect. 3 2
546 441.79 atmosphere 1010 43200 < th dose independent rect. 23 1
550 441.79 atmosphere 1010 43200 < th dose independent rect. 14 10
562 441.80 radiation 1 43200 > th dose independent rect. 17 1
620 441.83 atmosphere 1010 43200 > th dose independent no NA NA
642 441.83 atmosphere 1010 43200 > th dose independent rect. 10 23
655 441.84 atmosphere 1010 43200 > th dose independent rect. 22 13
666 441.84 radiation 1 43200 < th dose dependent rect. 5 1
693 441.85 atmosphere 1010 43200 > th dose dependent sin 17 NA
707 441.86 atmosphere 1010 43200 > th dose independent rect. 18 23
712 441.87 wind 1 43200 > th dose independent rect. 11 3
716 441.87 atmosphere 1010 43200 > th dose independent rect. 22 11
732 441.87 atmosphere 1010 43200 > th dose independent rect. 7 23
735 441.87 wind 9 43200 > th dose dependent rect. 15 1
738 441.88 atmosphere 1010 43200 < th dose independent rect. 21 3
778 441.90 humidity 80 43200 > th dose independent rect. 18 1
792 441.90 radiation 1 43200 < th dose dependent rect. 19 11
817 441.91 radiation 1 43200 < th dose dependent rect. 17 1
822 441.91 radiation 1 43200 < th dose dependent rect. 21 9
892 441.95 humidity 50 43200 < th dose independent rect. 13 1
928 441.97 atmosphere 1010 43200 > th dose independent rect. 10 1
944 441.97 atmosphere 1010 43200 > th dose dependent rect. 16 19