BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0253800 Os01g0253800|009-121-G03
         (175 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56320.1  | chr1:21085722-21086459 REVERSE LENGTH=164           91   4e-19
AT5G49350.1  | chr5:20009834-20011095 REVERSE LENGTH=303           86   9e-18

>AT1G56320.1 | chr1:21085722-21086459 REVERSE LENGTH=164
          Length = 163

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 49  IVARAIICFSDRYIFSGCQGQYRLGPEGALRVPAAAAEAFCGGPCLAETRLVLGCVDGIM 108
           +V RA  CF++  ++ GC   +RL  +G  +VP    + FC GPC AET LVL C++ +M
Sbjct: 39  LVQRAAFCFNNNLLYRGCNEAFRLNQQGEFKVPPEETDRFCNGPCSAETELVLTCINSVM 98

Query: 109 DSFRFYNGASVRDVRLALDRGCG---LRGDFDV 138
             F FYN A+ RDVR AL  GC     RG+F+V
Sbjct: 99  SDFVFYNRATPRDVRNALRGGCSSSFTRGNFNV 131



>AT5G49350.1 | chr5:20009834-20011095 REVERSE LENGTH=303
          Length = 302

 Score = 85.9 bits (211), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 48  DIVARAIICFSDRYIFSGCQGQYRLGPEGALRVPAAAAEAFCGGPCLAETRLVLGCVDGI 107
           +IVA+A+ C ++++I+  C   +RL   G L +P    E FC GPC +ET L L C++ I
Sbjct: 179 EIVAKALECLNEKHIYRECDESWRLTLNGDLNIPLGRTEEFCEGPCFSETHLALNCIEEI 238

Query: 108 MDSFRFYNGASVRDVRLALDRGCGL---RGDFDV 138
           +  +RF+N A++ D+R  L  GC     RG F+V
Sbjct: 239 IHHYRFFNRATIHDIRETLKSGCSYGPERGVFNV 272



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.140    0.488 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,052,430
Number of extensions: 110250
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 108 (46.2 bits)