Os01g0231900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Predicted eukaryotic LigT family protein.
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Os01g0231900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Predicted eukaryotic LigT family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.32 | 0.206 | 11.3 | -0.694 | 0.341 | -1.45 | -0.538 | -0.755 | -0.122 | 0.662 | 27.57 | 261 | -- | -- |
| 19.96 | 0.208 | 11.4 | -0.832 | 0.359 | -1.44 | -0.633 | -- | -0.15 | 0.826 | 28.04 | 258 | -- | -- |
| 20.28 | 0.21 | 11.3 | -0.632 | 0.413 | -1.52 | -- | -1.04 | -0.116 | 1.05 | 27.96 | 218 | -- | -- |
| 21.66 | 0.217 | 11.4 | -0.816 | 0.371 | -1.48 | -- | -- | -0.159 | 1.34 | 28.28 | 258 | -- | -- |
| 23.53 | 0.226 | 11.3 | -0.708 | -- | -1.44 | -- | -0.558 | -0.129 | -- | 26.59 | 489 | -- | -- |
| 50.22 | 0.332 | 11.3 | -0.464 | 0.296 | -- | -0.72 | -- | 0.159 | 20.9 | -- | -- | -- | -- |
| 51.83 | 0.337 | 11.3 | -0.437 | 0.308 | -- | -- | -- | 0.161 | 20.3 | -- | -- | -- | -- |
| 23.87 | 0.228 | 11.3 | -0.814 | -- | -1.4 | -- | -- | -0.151 | -- | 26.87 | 520 | -- | -- |
| 37.36 | 0.285 | 11.3 | -- | 0.295 | -1.12 | -- | -- | -0.000672 | 0.306 | 28.26 | 261 | -- | -- |
| 57.07 | 0.353 | 11.3 | -0.439 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 56.87 | 0.353 | 11.3 | -- | 0.31 | -- | -- | -- | 0.21 | 20.2 | -- | -- | -- | -- |
| 39.53 | 0.293 | 11.3 | -- | -- | -1.1 | -- | -- | -0.00203 | -- | 27.1 | 483 | -- | -- |
| 62.17 | 0.368 | 11.3 | -- | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.85 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 10 | 20.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 11 | 20.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 22 | 20.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 23 | 20.91 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 36 | 21.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 45 | 21.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 127 | 22.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 133 | 22.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 142 | 22.61 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 150 | 22.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 187 | 22.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 240 | 23.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 262 | 23.32 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 287 | 23.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 290 | 23.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 313 | 23.50 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 372 | 23.71 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 423 | 23.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 475 | 24.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 515 | 24.19 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 537 | 24.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 554 | 24.28 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 667 | 24.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 834 | 25.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 872 | 25.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 945 | 25.52 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 954 | 25.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 960 | 25.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 984 | 25.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |