BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0231900 Os01g0231900|AK073280
         (487 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16230.2  | chr3:5500563-5503303 FORWARD LENGTH=450            380   e-105
AT3G16220.1  | chr3:5497713-5499068 FORWARD LENGTH=258            232   4e-61

>AT3G16230.2 | chr3:5500563-5503303 FORWARD LENGTH=450
          Length = 449

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/499 (44%), Positives = 310/499 (62%), Gaps = 68/499 (13%)

Query: 1   MLACASLARFSRLARPLCAAGSAPRFLQGSVNQNSIHSLVMKGAQGASNNSAKHKKRKSA 60
           M A  +L R  R+       G   R  Q      SI  L  +G++ ++ +   +KK+K  
Sbjct: 1   MFAYRTLFRIDRVF------GFTSRCFQSKPESFSI--LSFRGSEKSAMDG--YKKQKMV 50

Query: 61  VQRWRPISTEAAAPKADLNEMSGPVSKQVEENSASDGTTNVVIEVSTYNASLPENKLATE 120
              WRPIST+ ++  A+    +G   ++V + S S   +  VIE  T  AS+        
Sbjct: 51  NLVWRPISTQTSSVIAE----AGNEVQEVAQCSKSSDVSKEVIEGET--ASVVS------ 98

Query: 121 DTMEDASFNKDIDRSNLSEKCSSSVQVDAPLMRFVKGKGGTMQKQIEDETGVKIIFPSSK 180
                            + K S S++V A L++F++GK GT Q ++E+E GVKII PSS+
Sbjct: 99  -----------------AGKHSVSLEVGASLIKFIRGKEGTTQMKLEEEMGVKIILPSSR 141

Query: 181 EETCVVLEAKTTEDIRKASEKIAKVLEEAVKSPILDYSHFISLPLAIHPSLVEKLNHFQC 240
            +  + +E  + + + KAS++IA +++E V+SP LDYSHF+SLPLAIHP LV+KL +FQ 
Sbjct: 142 NKDHISIEGGSVDCVTKASKRIATIIDEVVRSPSLDYSHFVSLPLAIHPELVDKLVNFQN 201

Query: 241 SILGTSSNVDSDKGEDLSEGSMDEIDHEQKQERSPSVSIKMQAHEESVRVKMDIKG---- 296
           SILG  S + SDK +D            Q    + SV++ ++A+ E+ +V + IK     
Sbjct: 202 SILGIHS-IASDKQDD------------QANRATTSVAVDLKANSETNQVNVGIKSIPIV 248

Query: 297 SQP-----------DFGIDKSIFIKPKTFHLTVLMLKLWNKDRIAKASDVLQSVSSQVME 345
           S P           D GI+KSIFIKP TFHLTV+MLKLWNKDR+  A DVL+S+   VM+
Sbjct: 249 SYPPKAKSKSSTLLDLGIEKSIFIKPSTFHLTVVMLKLWNKDRVNAACDVLKSIFPSVMD 308

Query: 346 ALENRPISIQLRGLTCMKGSPARARVVYAPVLEVGEEGRLQRACKVITDAFVKSGLVLER 405
           AL+N+P+ I+L+GL CM+G   + RV+YAPV E+G+EGRL RAC+VITDAFVK+GLVLE+
Sbjct: 309 ALDNKPVFIRLKGLDCMRGPLDKTRVLYAPVEEIGDEGRLLRACQVITDAFVKAGLVLEK 368

Query: 406 DARQELKLHVTIMNVRHRKSKRWNQRN-DSFDARNIFRKYGEHDWGEYLIPEIHLSQRFK 464
           DA+Q LKLHVT+MN RHRK ++ N++  ++FDAR I +++G  DWGEYLI E HLSQRF 
Sbjct: 369 DAKQSLKLHVTVMNARHRKRRKNNKKKMETFDAREIHKQFGNEDWGEYLIQEAHLSQRFV 428

Query: 465 FDERGYYYCCSSIPLPAAE 483
           FD+ GYY CC SIP P  +
Sbjct: 429 FDQNGYYRCCGSIPFPGEQ 447



>AT3G16220.1 | chr3:5497713-5499068 FORWARD LENGTH=258
          Length = 257

 Score =  232 bits (591), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/264 (45%), Positives = 162/264 (61%), Gaps = 44/264 (16%)

Query: 217 YSHFISLPLAIHPSLVEKLNHFQCSILGTSSNVDSDKGEDLSEGSMDEIDHEQKQERSPS 276
           ++HF+SLPLAI+P L + +  FQ S+LG   N D D                        
Sbjct: 36  FTHFVSLPLAIYPDLTKNIEAFQNSVLG---NNDKD------------------------ 68

Query: 277 VSIKMQAHEESVRVKMDIKGSQPDFGIDKSIFIKPKTFHLTVLMLKLWNKDRIAKASDVL 336
             +K Q+             +  + GI+KSIF+ PKTFHLTV+MLKL N + + KA ++L
Sbjct: 69  -PLKFQS-------------TLAEMGIEKSIFVTPKTFHLTVVMLKLENNESVVKAQNIL 114

Query: 337 QSVSSQVMEALENRPISIQLRGLTCMKGSPARARVVYAPVLEVGEEGRLQRACKVITDAF 396
           QS+ S V +AL+NRP+ I+LRGL CM GS  + RV+YAPV EVG EGRL  AC VI DAF
Sbjct: 115 QSIFSNVRQALKNRPVFIRLRGLECMSGSLDKTRVLYAPVEEVGREGRLLNACHVIIDAF 174

Query: 397 VKSGLVLERDARQELKLHVTIMNVRHRKSKRWNQRNDSFDARNIFRKYGEHDWGEYLIPE 456
              G    +DA+  LKLH T+MN  +RK K  +++ D+FDAR I +++   DWG YLI E
Sbjct: 175 ENVGFA-GKDAKSRLKLHATLMNASYRKDK--SKKMDTFDAREIHKEFENKDWGTYLIRE 231

Query: 457 IHLSQRFKFDERGYYYCCSSIPLP 480
            H+SQR+K+D  GY++CC+S+P P
Sbjct: 232 AHISQRYKYDPNGYFHCCASLPFP 255



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,146,017
Number of extensions: 419496
Number of successful extensions: 1476
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1473
Number of HSP's successfully gapped: 2
Length of query: 487
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 385
Effective length of database: 8,310,137
Effective search space: 3199402745
Effective search space used: 3199402745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)