BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0231900 Os01g0231900|AK073280
         (487 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0231900  Predicted eukaryotic LigT family protein           1012   0.0  
Os01g0231800  Appr>p cyclic nucleotide phosphodiesterase dom...   262   5e-70

>Os01g0231900 Predicted eukaryotic LigT family protein
          Length = 487

 Score = 1012 bits (2616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/487 (100%), Positives = 487/487 (100%)

Query: 1   MLACASLARFSRLARPLCAAGSAPRFLQGSVNQNSIHSLVMKGAQGASNNSAKHKKRKSA 60
           MLACASLARFSRLARPLCAAGSAPRFLQGSVNQNSIHSLVMKGAQGASNNSAKHKKRKSA
Sbjct: 1   MLACASLARFSRLARPLCAAGSAPRFLQGSVNQNSIHSLVMKGAQGASNNSAKHKKRKSA 60

Query: 61  VQRWRPISTEAAAPKADLNEMSGPVSKQVEENSASDGTTNVVIEVSTYNASLPENKLATE 120
           VQRWRPISTEAAAPKADLNEMSGPVSKQVEENSASDGTTNVVIEVSTYNASLPENKLATE
Sbjct: 61  VQRWRPISTEAAAPKADLNEMSGPVSKQVEENSASDGTTNVVIEVSTYNASLPENKLATE 120

Query: 121 DTMEDASFNKDIDRSNLSEKCSSSVQVDAPLMRFVKGKGGTMQKQIEDETGVKIIFPSSK 180
           DTMEDASFNKDIDRSNLSEKCSSSVQVDAPLMRFVKGKGGTMQKQIEDETGVKIIFPSSK
Sbjct: 121 DTMEDASFNKDIDRSNLSEKCSSSVQVDAPLMRFVKGKGGTMQKQIEDETGVKIIFPSSK 180

Query: 181 EETCVVLEAKTTEDIRKASEKIAKVLEEAVKSPILDYSHFISLPLAIHPSLVEKLNHFQC 240
           EETCVVLEAKTTEDIRKASEKIAKVLEEAVKSPILDYSHFISLPLAIHPSLVEKLNHFQC
Sbjct: 181 EETCVVLEAKTTEDIRKASEKIAKVLEEAVKSPILDYSHFISLPLAIHPSLVEKLNHFQC 240

Query: 241 SILGTSSNVDSDKGEDLSEGSMDEIDHEQKQERSPSVSIKMQAHEESVRVKMDIKGSQPD 300
           SILGTSSNVDSDKGEDLSEGSMDEIDHEQKQERSPSVSIKMQAHEESVRVKMDIKGSQPD
Sbjct: 241 SILGTSSNVDSDKGEDLSEGSMDEIDHEQKQERSPSVSIKMQAHEESVRVKMDIKGSQPD 300

Query: 301 FGIDKSIFIKPKTFHLTVLMLKLWNKDRIAKASDVLQSVSSQVMEALENRPISIQLRGLT 360
           FGIDKSIFIKPKTFHLTVLMLKLWNKDRIAKASDVLQSVSSQVMEALENRPISIQLRGLT
Sbjct: 301 FGIDKSIFIKPKTFHLTVLMLKLWNKDRIAKASDVLQSVSSQVMEALENRPISIQLRGLT 360

Query: 361 CMKGSPARARVVYAPVLEVGEEGRLQRACKVITDAFVKSGLVLERDARQELKLHVTIMNV 420
           CMKGSPARARVVYAPVLEVGEEGRLQRACKVITDAFVKSGLVLERDARQELKLHVTIMNV
Sbjct: 361 CMKGSPARARVVYAPVLEVGEEGRLQRACKVITDAFVKSGLVLERDARQELKLHVTIMNV 420

Query: 421 RHRKSKRWNQRNDSFDARNIFRKYGEHDWGEYLIPEIHLSQRFKFDERGYYYCCSSIPLP 480
           RHRKSKRWNQRNDSFDARNIFRKYGEHDWGEYLIPEIHLSQRFKFDERGYYYCCSSIPLP
Sbjct: 421 RHRKSKRWNQRNDSFDARNIFRKYGEHDWGEYLIPEIHLSQRFKFDERGYYYCCSSIPLP 480

Query: 481 AAEMQTE 487
           AAEMQTE
Sbjct: 481 AAEMQTE 487



>Os01g0231800 Appr>p cyclic nucleotide phosphodiesterase domain containing
           protein
          Length = 225

 Score =  262 bits (669), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/271 (52%), Positives = 168/271 (61%), Gaps = 53/271 (19%)

Query: 217 YSHFISLPLAIHPSLVEKLNHFQCSILGTSSNVDSDKGEDLSEGSMDEIDHEQKQERSPS 276
           ++HFISLPL IHP LV+KLN F+ SIL  +SN     G                      
Sbjct: 4   FTHFISLPLGIHPQLVDKLNEFKRSIL--TSNEYKAAG---------------------- 39

Query: 277 VSIKMQAHEESVRVKMDIKGSQPDFGIDKSIFIKPKTFHLTVLMLKLWNKDRIAKASDVL 336
                                   F ID+SIF  P++ HLTVLML+L   + IAKAS VL
Sbjct: 40  ------------------------FRIDESIFAIPESLHLTVLMLEL-KGENIAKASSVL 74

Query: 337 QSVSSQVMEALENRPISIQLRGLTCMKGSPARARVVYAPVLEVGEEGRLQRACKVITDAF 396
           QSVS ++MEAL+NRPISIQLRGL CMKGSP +A VVYAPVLEVGE+GRLQ+ C +I DAF
Sbjct: 75  QSVSDKLMEALKNRPISIQLRGLACMKGSPDKAWVVYAPVLEVGEQGRLQQVCDIIIDAF 134

Query: 397 VKSGLVLERDARQELKLHVTIMNVRHRKSKRWNQRNDSFDARNIFRKYGEHDWGEYLIPE 456
             S L    D ++ELKLH T+MN R RK       + SFDAR IF KY EH+WGEYLIPE
Sbjct: 135 TSSNLAPTSDEKRELKLHATVMNARFRKGY---CPDASFDARKIFEKYAEHEWGEYLIPE 191

Query: 457 IHLSQRFKFDERGYYYCCSSIPLPAAEMQTE 487
           IHL Q  +FDE G+YYCCSS+PLP   MQ E
Sbjct: 192 IHLCQTRRFDESGHYYCCSSLPLP-GNMQAE 221



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,464,764
Number of extensions: 614302
Number of successful extensions: 1943
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1941
Number of HSP's successfully gapped: 2
Length of query: 487
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 382
Effective length of database: 11,553,331
Effective search space: 4413372442
Effective search space used: 4413372442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)