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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0217100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.79 (0.0349) R2 : 0.498
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.34 (0.0809) R2dC : 0.303 R2C : 0.224
β3 : 1.06 (0.15) R2dE : 0.0684 R2E : -0.137
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.06 (0.0796) R2dN8 : 0.32 R2N8 : 0.128
σ : 0.637
deviance : 186.84
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_____
C
peak time of C : 23.4
E
wheather : humidity
threshold : 70
memory length : 9012
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.24 0.62 5.69 0.513 1.22 0.443 -1.64 2.41 -0.735 22.8 69.6 1275 -- --
177.66 0.621 5.7 0.32 1.27 0.948 -1.28 -- -0.853 23 69.98 8303 -- --
182.47 0.629 5.68 0.585 1.34 0.405 -- 2.58 -0.719 23.1 69.46 1509 -- --
179.92 0.625 5.78 0.519 1.35 1.09 -- -- -1.03 23.2 70 8825 -- --
264.38 0.757 5.67 0.563 -- 1.14 -- 2.53 -0.748 -- 71 2407 -- --
198.11 0.66 5.73 0.32 1.33 -- -1.18 -- -0.782 23 -- -- -- --
203.93 0.669 5.72 0.367 1.33 -- -- -- -0.779 23.2 -- -- -- --
255.12 0.744 5.67 0.33 -- 1.42 -- -- -0.88 -- 79.01 2373 -- --
186.84 0.637 5.79 -- 1.34 1.06 -- -- -1.06 23.4 70 9012 -- --
314.67 0.829 5.69 0.399 -- -- -- -- -0.768 -- -- -- -- --
207.48 0.674 5.73 -- 1.33 -- -- -- -0.82 23.2 -- -- -- --
255.33 0.744 5.73 -- -- 1.82 -- -- -0.948 -- 79.13 2373 -- --
318.87 0.833 5.7 -- -- -- -- -- -0.812 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.61 humidity 90.0 14400 > th dose dependent rect. 6 5
3 160.94 humidity 90.0 14400 > th dose dependent rect. 6 8
6 161.24 humidity 90.0 14400 > th dose dependent rect. 6 11
9 161.78 humidity 90.0 14400 > th dose dependent rect. 9 1
10 162.02 precipitation 0.1 14400 < th dose independent rect. 2 16
11 162.02 precipitation 0.1 14400 < th dose dependent rect. 2 16
14 162.12 precipitation 0.1 14400 > th dose independent rect. 2 16
37 163.08 precipitation 0.1 14400 > th dose dependent sin 3 NA
45 163.37 humidity 90.0 14400 > th dose dependent rect. 7 1
75 163.89 precipitation 0.1 14400 < th dose independent sin 2 NA
76 163.89 precipitation 0.1 14400 < th dose dependent sin 2 NA
81 163.92 precipitation 0.1 14400 > th dose independent sin 2 NA
86 163.97 humidity 90.0 14400 > th dose dependent rect. 5 17
106 164.22 humidity 90.0 14400 > th dose dependent sin 0 NA
117 164.33 precipitation 0.1 14400 > th dose dependent rect. 23 20
150 164.85 precipitation 0.1 14400 > th dose independent rect. 13 4
151 164.85 precipitation 0.1 14400 < th dose independent rect. 19 23
153 164.85 precipitation 0.1 14400 < th dose dependent rect. 19 23
154 164.86 precipitation 0.1 14400 > th dose independent rect. 19 23
160 164.88 precipitation 0.1 14400 < th dose independent rect. 12 22
161 164.88 precipitation 0.1 14400 < th dose dependent rect. 12 22
165 164.90 precipitation 0.1 14400 > th dose independent rect. 12 22
190 164.99 precipitation 0.1 14400 < th dose independent rect. 9 23
192 164.99 precipitation 0.1 14400 < th dose dependent rect. 9 23
195 165.00 precipitation 0.1 14400 > th dose independent rect. 9 23
203 165.02 precipitation 0.1 14400 < th dose independent rect. 15 23
207 165.02 precipitation 0.1 14400 < th dose dependent rect. 15 23
209 165.03 precipitation 0.1 14400 < th dose independent rect. 13 4
214 165.03 precipitation 0.1 14400 < th dose dependent rect. 13 4
218 165.04 precipitation 0.1 14400 > th dose independent no NA NA
219 165.04 precipitation 0.1 14400 < th dose independent no NA NA
223 165.04 precipitation 0.1 14400 < th dose dependent no NA NA
226 165.05 precipitation 0.1 14400 > th dose independent rect. 15 23
233 165.06 precipitation 0.1 14400 > th dose dependent rect. 3 14
245 165.09 precipitation 0.1 14400 > th dose independent rect. 7 23
267 165.13 wind 3.0 43200 > th dose independent rect. 6 2
371 165.35 precipitation 0.1 14400 > th dose dependent rect. 13 4
372 165.36 precipitation 0.1 14400 > th dose independent rect. 15 1
374 165.36 precipitation 0.1 14400 > th dose dependent rect. 15 1
396 165.46 wind 3.0 43200 < th dose independent rect. 6 2
420 165.54 precipitation 0.1 14400 < th dose independent rect. 15 2
421 165.54 precipitation 0.1 14400 < th dose dependent rect. 15 2
481 165.78 humidity 90.0 14400 > th dose independent rect. 6 4
503 165.86 humidity 80.0 14400 > th dose independent rect. 8 3
512 165.93 humidity 80.0 14400 < th dose independent rect. 8 3
545 166.19 humidity 90.0 14400 > th dose independent rect. 6 8
558 166.29 precipitation 0.1 14400 < th dose independent rect. 12 8
559 166.29 precipitation 0.1 14400 < th dose dependent rect. 12 8
560 166.30 precipitation 0.1 14400 > th dose independent rect. 12 8
575 166.40 precipitation 0.1 14400 > th dose independent rect. 9 11
580 166.42 precipitation 0.1 14400 < th dose independent rect. 9 11
583 166.42 precipitation 0.1 14400 < th dose dependent rect. 9 11
693 166.83 wind 3.0 43200 < th dose independent rect. 2 6
703 166.87 humidity 70.0 14400 > th dose dependent rect. 9 2
723 166.95 humidity 90.0 14400 > th dose dependent rect. 15 1
757 167.10 wind 3.0 43200 > th dose independent rect. 2 6
784 167.18 precipitation 0.1 14400 > th dose independent sin 14 NA
787 167.18 radiation 1.0 1440 > th dose independent rect. 18 14
791 167.19 radiation 1.0 1440 < th dose independent rect. 18 14
792 167.20 precipitation 0.1 14400 < th dose independent sin 14 NA
795 167.20 precipitation 0.1 14400 < th dose dependent sin 14 NA
820 167.28 precipitation 0.1 14400 > th dose dependent no NA NA
823 167.30 humidity 90.0 14400 > th dose independent rect. 6 16
825 167.30 precipitation 0.1 14400 > th dose dependent rect. 9 23
826 167.30 precipitation 0.1 14400 > th dose dependent rect. 11 23
836 167.34 precipitation 0.1 14400 > th dose dependent rect. 7 23
883 167.46 precipitation 0.1 14400 > th dose dependent rect. 15 23
887 167.47 precipitation 0.1 14400 > th dose dependent rect. 19 23
904 167.53 wind 1.0 43200 > th dose dependent rect. 6 1
948 167.72 wind 1.0 43200 > th dose independent rect. 1 1
975 167.79 wind 5.0 43200 < th dose dependent rect. 6 1
991 167.82 precipitation 0.1 14400 > th dose dependent rect. 3 11