BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0217100 Os01g0217100|AK099424
         (183 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08700.1  | chr4:5565998-5567286 REVERSE LENGTH=362             49   2e-06

>AT4G08700.1 | chr4:5565998-5567286 REVERSE LENGTH=362
          Length = 361

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 53  ESDKGTSRXXXXXXXXXXXXXVSSKRLRWWAVVLANIVFVLGGQSVGCFSAGYTTIRGGD 112
           E D+GT R                KR  WW +V  +I F++  Q++      +    GG+
Sbjct: 12  EEDEGTRRTSVPTQLMKL------KRTHWWILVFISIFFLISAQAIAVLLGRFYYNEGGN 65

Query: 113 SLWLATVVQSCGAPL 127
           S W++T+VQ+CG P+
Sbjct: 66  SKWISTLVQTCGFPI 80



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.125    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,149,021
Number of extensions: 101882
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 91
Effective length of database: 8,584,297
Effective search space: 781171027
Effective search space used: 781171027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 108 (46.2 bits)