Os01g0212400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/calcium exchanger membrane region domain containing protein.
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Os01g0212400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/calcium exchanger membrane region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.89 | 0.335 | 11.6 | 1.16 | 1.1 | -0.23 | 0.561 | 3.44 | 0.357 | 22.4 | 19.3 | 3186 | -- | -- |
| 59.14 | 0.361 | 11.7 | 0.225 | 1.02 | -0.542 | 0.576 | -- | 0.132 | 21.9 | 5.569 | 47520 | -- | -- |
| 51.94 | 0.336 | 11.5 | 1.13 | 1.1 | -0.232 | -- | 3.54 | 0.357 | 22.4 | 19.17 | 3462 | -- | -- |
| 60.29 | 0.364 | 11.7 | 0.163 | 1.04 | -0.452 | -- | -- | 0.0843 | 21.8 | 25.3 | 47520 | -- | -- |
| 114.88 | 0.502 | 11.6 | 0.558 | -- | -0.977 | -- | 1.57 | 0.279 | -- | 19.17 | 3462 | -- | -- |
| 61.91 | 0.369 | 11.7 | 0.12 | 1.09 | -- | 0.593 | -- | 0.0554 | 22.4 | -- | -- | -- | -- |
| 63.33 | 0.373 | 11.7 | 0.0964 | 1.09 | -- | -- | -- | 0.054 | 22.4 | -- | -- | -- | -- |
| 117.54 | 0.507 | 11.6 | 0.293 | -- | -0.903 | -- | -- | 0.203 | -- | 19.17 | 3462 | -- | -- |
| 59.8 | 0.36 | 11.7 | -- | 1.08 | 0.27 | -- | -- | -0.0139 | 22.4 | 32.59 | 47520 | -- | -- |
| 135.72 | 0.544 | 11.7 | 0.114 | -- | -- | -- | -- | 0.0576 | -- | -- | -- | -- | -- |
| 63.58 | 0.373 | 11.7 | -- | 1.09 | -- | -- | -- | 0.0432 | 22.4 | -- | -- | -- | -- |
| 119.7 | 0.511 | 11.6 | -- | -- | -0.838 | -- | -- | 0.161 | -- | 19.17 | 3462 | -- | -- |
| 136.07 | 0.544 | 11.7 | -- | -- | -- | -- | -- | 0.0449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.31 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 2 | 49.37 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 4 | 49.49 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 16 | 50.10 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 17 | 50.10 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 18 | 50.11 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 23 | 50.18 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 36 | 50.23 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 37 | 50.23 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 53 | 50.37 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 55 | 50.39 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 58 | 50.42 | wind | 5.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 64 | 50.47 | wind | 5.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 68 | 50.49 | wind | 5.0 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 74 | 50.50 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 91 | 50.58 | wind | 5.0 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 92 | 50.58 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 95 | 50.59 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 97 | 50.60 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 103 | 50.63 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 111 | 50.65 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 112 | 50.65 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 23 | 4 |
| 118 | 50.66 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 128 | 50.68 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 8 |
| 129 | 50.69 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 132 | 50.70 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 138 | 50.71 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 9 | NA |
| 152 | 50.74 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 164 | 50.75 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 174 | 50.76 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 22 | 6 |
| 177 | 50.76 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 179 | 50.77 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 181 | 50.77 | wind | 5.0 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 188 | 50.78 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 8 |
| 225 | 50.85 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 226 | 50.85 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 227 | 50.85 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 233 | 50.86 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 11 |
| 267 | 50.89 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 278 | 50.91 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 290 | 50.93 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 19 | 4 |
| 291 | 50.93 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 299 | 50.94 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 301 | 50.94 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 307 | 50.95 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 321 | 50.96 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 322 | 50.96 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 337 | 50.97 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 344 | 50.98 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 345 | 50.98 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 346 | 50.98 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 347 | 50.98 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 375 | 51.00 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 462 | 51.06 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 478 | 51.06 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 486 | 51.07 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 492 | 51.07 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 507 | 51.08 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 551 | 51.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 569 | 51.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 584 | 51.12 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 590 | 51.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 591 | 51.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 601 | 51.14 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 603 | 51.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 604 | 51.14 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 612 | 51.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 613 | 51.14 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 637 | 51.16 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 643 | 51.16 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 644 | 51.16 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 655 | 51.16 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 662 | 51.16 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 17 |
| 674 | 51.17 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 693 | 51.18 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 716 | 51.19 | radiation | 1.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 718 | 51.19 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 765 | 51.21 | radiation | 1.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 793 | 51.22 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 17 |
| 815 | 51.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 872 | 51.24 | temperature | 20.0 | 4320 | > th | dose independent | sin | 9 | NA |
| 917 | 51.25 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 948 | 51.26 | temperature | 20.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 961 | 51.26 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 997 | 51.27 | radiation | 1.0 | 43200 | < th | dose dependent | no | NA | NA |