BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0212400 Os01g0212400|AK066468
         (584 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0212400  Sodium/calcium exchanger membrane region domai...   996   0.0  
Os02g0247800  Conserved hypothetical protein                      150   4e-36

>Os01g0212400 Sodium/calcium exchanger membrane region domain containing protein
          Length = 584

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/584 (85%), Positives = 497/584 (85%)

Query: 1   MATRRRSXXXXXXXXXXXXXXXYGRLISDGXXXXXXXXXXXXNPVSAVIRLTTXXXXXXX 60
           MATRRRS               YGRLISDG            NPVSAVIRLTT       
Sbjct: 1   MATRRRSFPLVPLLLFLLAAAAYGRLISDGSPASASATSLLSNPVSAVIRLTTSNSASAS 60

Query: 61  XXXXXXXEEKCEQSYGFLPCTTTVLGNLFLVLAYGFLMYKAATFLSAGSELLLEIMXXXX 120
                  EEKCEQSYGFLPCTTTVLGNLFLVLAYGFLMYKAATFLSAGSELLLEIM    
Sbjct: 61  SPPAAAPEEKCEQSYGFLPCTTTVLGNLFLVLAYGFLMYKAATFLSAGSELLLEIMGPGL 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXRETAQSQVLIGMGLLAGSTVFLLTLLWGTCVVVG 180
                                     RETAQSQVLIGMGLLAGSTVFLLTLLWGTCVVVG
Sbjct: 121 VGGLLLPILGALPDALLVLVSGLSGSRETAQSQVLIGMGLLAGSTVFLLTLLWGTCVVVG 180

Query: 181 KCDIGPNGVAVDLQNNKGFSLTGTGISTDVQTSYAARIMGISVIPFIIAQFPKMLKTHHG 240
           KCDIGPNGVAVDLQNNKGFSLTGTGISTDVQTSYAARIMGISVIPFIIAQFPKMLKTHHG
Sbjct: 181 KCDIGPNGVAVDLQNNKGFSLTGTGISTDVQTSYAARIMGISVIPFIIAQFPKMLKTHHG 240

Query: 241 QRLAVLLALIVSFSLVLAYCLYQVFQPWIQKRKLAYAKHKHVISGILRHAQMEALGRLLN 300
           QRLAVLLALIVSFSLVLAYCLYQVFQPWIQKRKLAYAKHKHVISGILRHAQMEALGRLLN
Sbjct: 241 QRLAVLLALIVSFSLVLAYCLYQVFQPWIQKRKLAYAKHKHVISGILRHAQMEALGRLLN 300

Query: 301 EDGTPNEDVIKKLFHKIDMDESQTLSRAELHALIIGINFEEVDFDKNDAVDKIMDDFDTS 360
           EDGTPNEDVIKKLFHKIDMDESQTLSRAELHALIIGINFEEVDFDKNDAVDKIMDDFDTS
Sbjct: 301 EDGTPNEDVIKKLFHKIDMDESQTLSRAELHALIIGINFEEVDFDKNDAVDKIMDDFDTS 360

Query: 361 GNDIVEEAEFVSGMKRWLNEAKRSVPTSGAYSNKFITDYHARTRQEHDLLVDRSDETVES 420
           GNDIVEEAEFVSGMKRWLNEAKRSVPTSGAYSNKFITDYHARTRQEHDLLVDRSDETVES
Sbjct: 361 GNDIVEEAEFVSGMKRWLNEAKRSVPTSGAYSNKFITDYHARTRQEHDLLVDRSDETVES 420

Query: 421 VENPGWCITKXXXXXXXXXXXXXXXXDPLVDAVHNFSNASHIPSFFISFIALPLATNSSE 480
           VENPGWCITK                DPLVDAVHNFSNASHIPSFFISFIALPLATNSSE
Sbjct: 421 VENPGWCITKAVGLLLLGSAIAAAFADPLVDAVHNFSNASHIPSFFISFIALPLATNSSE 480

Query: 481 AVSAIIFASRKKLRTSSLTFSEVYGGVTMNNTLCLGVFLALIYIRNLTWDFSSEVLIILL 540
           AVSAIIFASRKKLRTSSLTFSEVYGGVTMNNTLCLGVFLALIYIRNLTWDFSSEVLIILL
Sbjct: 481 AVSAIIFASRKKLRTSSLTFSEVYGGVTMNNTLCLGVFLALIYIRNLTWDFSSEVLIILL 540

Query: 541 VCVIMGLFTSFRTTFPLWTCLVAYMLYPLSLVVVYILDFVFGWS 584
           VCVIMGLFTSFRTTFPLWTCLVAYMLYPLSLVVVYILDFVFGWS
Sbjct: 541 VCVIMGLFTSFRTTFPLWTCLVAYMLYPLSLVVVYILDFVFGWS 584



>Os02g0247800 Conserved hypothetical protein
          Length = 84

 Score =  150 bits (378), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 78/83 (93%)

Query: 502 EVYGGVTMNNTLCLGVFLALIYIRNLTWDFSSEVLIILLVCVIMGLFTSFRTTFPLWTCL 561
           +VYGGVTMNNTLCL VFLAL+Y+R LTWDFSSEVLIILLVC+IMGLFTSFRT FPLWTC 
Sbjct: 2   QVYGGVTMNNTLCLAVFLALVYVRGLTWDFSSEVLIILLVCIIMGLFTSFRTDFPLWTCF 61

Query: 562 VAYMLYPLSLVVVYILDFVFGWS 584
           VA++LYPLSL++VYILD+ FGWS
Sbjct: 62  VAFLLYPLSLIMVYILDYKFGWS 84



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,614,037
Number of extensions: 520063
Number of successful extensions: 1597
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1595
Number of HSP's successfully gapped: 2
Length of query: 584
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 478
Effective length of database: 11,501,117
Effective search space: 5497533926
Effective search space used: 5497533926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 159 (65.9 bits)