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Os01g0197200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ethylene-responsive RNA helicase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0102) R2 : 0.0455
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.1 (0.0215) R2dN8 : 0.0588 R2N8 : 0.0455
σ : 0.192
deviance : 16.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.61 0.173 11.1 -0.00527 0.166 -0.365 -0.197 -0.53 -0.087 20.5 5.1 234 -- --
13.87 0.173 11.1 0.00681 0.167 -0.273 -0.264 -- -0.0911 20.1 4.603 199 -- --
13.7 0.172 11.1 0.000972 0.161 -0.364 -- -0.564 -0.0864 20.4 5.086 194 -- --
14.08 0.175 11.1 0.0153 0.162 -0.262 -- -- -0.0913 20.2 4.7 198 -- --
14.89 0.18 11.1 0.0201 -- -0.293 -- -0.42 -0.0908 -- 5.247 121 -- --
15.58 0.185 11.1 0.0788 0.125 -- -0.186 -- -0.0923 23.5 -- -- -- --
15.73 0.186 11.1 0.0862 0.126 -- -- -- -0.0917 23.7 -- -- -- --
15.08 0.181 11.1 0.0317 -- -0.225 -- -- -0.096 -- 5.03 110 -- --
14.08 0.175 11.1 -- 0.165 -0.268 -- -- -0.0929 20.2 4.7 199 -- --
16.73 0.191 11.1 0.0897 -- -- -- -- -0.0902 -- -- -- -- --
15.92 0.187 11.1 -- 0.127 -- -- -- -0.101 23.7 -- -- -- --
15.1 0.181 11.1 -- -- -0.231 -- -- -0.0995 -- 5.092 110 -- --
16.94 0.192 11.1 -- -- -- -- -- -0.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.01 temperature 25.0 270 < th dose independent rect. 23 7
4 13.13 wind 5.0 270 < th dose independent rect. 4 23
7 13.19 humidity 60.0 14400 > th dose independent rect. 16 4
20 13.22 humidity 60.0 14400 < th dose independent rect. 16 17
22 13.24 humidity 60.0 14400 < th dose independent rect. 16 4
37 13.26 temperature 25.0 1440 > th dose independent rect. 24 1
38 13.26 humidity 60.0 14400 < th dose independent rect. 16 1
46 13.30 humidity 70.0 14400 < th dose dependent rect. 17 16
51 13.34 wind 5.0 270 > th dose independent rect. 11 21
54 13.35 humidity 80.0 1440 < th dose independent rect. 19 17
55 13.36 humidity 70.0 14400 < th dose independent rect. 18 1
59 13.37 humidity 80.0 720 > th dose independent rect. 19 19
67 13.39 radiation 10.0 4320 > th dose independent rect. 17 13
68 13.39 humidity 70.0 14400 < th dose independent rect. 18 14
69 13.39 humidity 80.0 1440 > th dose independent rect. 19 17
90 13.41 wind 5.0 270 > th dose independent rect. 11 15
92 13.41 wind 5.0 90 < th dose independent rect. 11 16
94 13.41 wind 5.0 270 > th dose independent rect. 11 18
99 13.41 wind 5.0 270 > th dose independent rect. 20 22
100 13.42 radiation 10.0 4320 > th dose independent rect. 17 1
131 13.42 humidity 70.0 14400 < th dose dependent rect. 17 4
142 13.42 wind 7.0 90 < th dose dependent rect. 6 21
143 13.43 humidity 80.0 720 < th dose independent rect. 19 4
149 13.44 humidity 80.0 1440 > th dose dependent rect. 10 1
151 13.45 temperature 25.0 1440 < th dose independent rect. 24 3
159 13.45 humidity 80.0 1440 > th dose dependent rect. 5 9
172 13.48 humidity 80.0 1440 > th dose independent rect. 6 4
182 13.48 humidity 80.0 1440 > th dose dependent rect. 6 6
191 13.49 wind 5.0 270 < th dose independent rect. 15 23
195 13.50 humidity 60.0 14400 < th dose independent sin 12 NA
207 13.50 wind 3.0 90 > th dose dependent rect. 12 21
209 13.51 wind 5.0 270 < th dose independent rect. 15 10
231 13.52 wind 3.0 43200 < th dose independent rect. 5 1
232 13.52 humidity 80.0 1440 < th dose independent rect. 8 2
234 13.52 humidity 80.0 4320 > th dose independent rect. 20 6
244 13.52 humidity 80.0 1440 > th dose dependent rect. 6 3
248 13.52 wind 3.0 43200 < th dose dependent rect. 23 7
251 13.53 humidity 80.0 1440 < th dose independent rect. 6 4
252 13.53 humidity 80.0 4320 < th dose independent rect. 20 5
254 13.53 wind 5.0 270 > th dose independent rect. 11 7
258 13.53 wind 3.0 90 > th dose dependent sin 18 NA
265 13.54 humidity 80.0 1440 > th dose independent rect. 10 1
266 13.54 radiation 10.0 4320 < th dose independent rect. 17 1
268 13.54 precipitation 0.1 4320 < th dose independent rect. 5 2
269 13.54 wind 3.0 43200 > th dose independent rect. 1 3
270 13.54 wind 3.0 43200 < th dose independent rect. 1 3
272 13.54 wind 5.0 90 < th dose independent rect. 15 12
278 13.54 precipitation 0.1 4320 < th dose dependent rect. 5 2
291 13.55 wind 5.0 270 > th dose independent sin 20 NA
293 13.55 wind 3.0 43200 > th dose independent rect. 5 1
308 13.55 humidity 80.0 1440 > th dose dependent rect. 7 1
313 13.56 humidity 60.0 14400 > th dose independent sin 12 NA
316 13.56 temperature 25.0 90 < th dose independent rect. 3 4
322 13.56 humidity 70.0 14400 > th dose independent rect. 19 13
340 13.56 wind 3.0 270 > th dose dependent rect. 11 16
346 13.57 humidity 70.0 14400 < th dose independent rect. 18 4
380 13.58 temperature 25.0 270 > th dose independent rect. 22 9
381 13.58 radiation 10.0 4320 < th dose independent rect. 17 9
382 13.58 radiation 10.0 4320 < th dose independent rect. 17 11
393 13.58 wind 1.0 43200 > th dose dependent rect. 5 1
404 13.58 wind 3.0 270 > th dose dependent rect. 21 21
406 13.59 wind 5.0 90 > th dose independent sin 17 NA
409 13.59 humidity 80.0 720 > th dose independent rect. 19 4
411 13.59 humidity 80.0 720 > th dose independent rect. 19 8
421 13.59 humidity 70.0 1440 > th dose dependent sin 3 NA
426 13.59 wind 1.0 43200 > th dose dependent rect. 23 8
437 13.60 wind 3.0 43200 < th dose independent rect. 1 5
441 13.60 wind 5.0 270 < th dose independent rect. 11 14
449 13.60 humidity 60.0 14400 < th dose dependent sin 12 NA
450 13.60 wind 3.0 43200 < th dose dependent rect. 4 3
459 13.61 radiation 10.0 4320 < th dose independent rect. 17 3
462 13.61 wind 3.0 43200 > th dose independent rect. 1 5
483 13.61 wind 5.0 270 > th dose independent rect. 5 22
486 13.61 wind 7.0 43200 < th dose dependent rect. 1 1
503 13.62 wind 5.0 270 > th dose independent no NA NA
517 13.62 wind 5.0 270 > th dose independent rect. 2 23
532 13.62 wind 9.0 43200 < th dose dependent rect. 23 8
621 13.64 wind 5.0 270 > th dose independent rect. 24 23
632 13.64 wind 9.0 90 < th dose dependent rect. 5 23
634 13.65 wind 3.0 43200 < th dose independent rect. 2 1
669 13.65 wind 3.0 270 > th dose dependent rect. 11 7
673 13.65 wind 3.0 90 > th dose dependent rect. 12 11
684 13.66 humidity 80.0 14400 > th dose independent rect. 10 1
685 13.66 humidity 80.0 4320 > th dose independent rect. 21 1
690 13.66 humidity 80.0 720 > th dose independent rect. 19 6
693 13.66 wind 5.0 90 < th dose independent rect. 13 14
697 13.66 humidity 80.0 270 > th dose independent rect. 6 19
705 13.66 precipitation 0.1 4320 > th dose dependent rect. 5 2
706 13.66 wind 1.0 43200 > th dose dependent rect. 4 3
738 13.67 wind 5.0 90 < th dose independent sin 17 NA
739 13.67 wind 5.0 270 < th dose independent no NA NA
740 13.67 precipitation 0.1 14400 > th dose independent rect. 19 1
741 13.67 precipitation 0.1 14400 < th dose independent rect. 19 1
743 13.67 humidity 80.0 1440 < th dose independent rect. 10 2
744 13.67 precipitation 0.1 4320 > th dose independent rect. 5 2
754 13.67 wind 5.0 90 < th dose independent rect. 17 10
774 13.67 precipitation 0.1 14400 < th dose dependent rect. 19 1
776 13.67 precipitation 0.1 14400 > th dose dependent rect. 16 2
801 13.67 humidity 70.0 90 > th dose dependent rect. 6 21
821 13.68 humidity 80.0 720 > th dose independent rect. 19 10
874 13.69 wind 9.0 43200 < th dose dependent rect. 5 1
885 13.69 humidity 60.0 1440 > th dose dependent rect. 18 18
890 13.70 temperature 25.0 270 < th dose independent rect. 1 1
896 13.70 temperature 25.0 90 < th dose independent rect. 3 6
921 13.70 wind 9.0 43200 < th dose dependent rect. 4 3
973 13.71 temperature 25.0 1440 > th dose dependent rect. 24 1
974 13.71 radiation 40.0 4320 < th dose dependent rect. 7 1