BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0197200 Os01g0197200|J100055C06
(71 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55150.1 | chr1:20574634-20577141 FORWARD LENGTH=502 108 4e-25
AT5G63120.2 | chr5:25318967-25322071 REVERSE LENGTH=592 90 3e-19
AT3G01540.2 | chr3:213077-216142 REVERSE LENGTH=620 84 2e-17
AT3G06480.1 | chr3:1985697-1989666 REVERSE LENGTH=1089 79 4e-16
AT5G14610.1 | chr5:4711271-4714713 FORWARD LENGTH=713 76 3e-15
AT3G58570.1 | chr3:21657099-21660352 FORWARD LENGTH=647 55 5e-09
AT2G42520.1 | chr2:17705382-17708744 FORWARD LENGTH=634 55 1e-08
AT1G31970.1 | chr1:11479921-11482707 FORWARD LENGTH=538 55 1e-08
AT3G58510.1 | chr3:21640608-21643464 FORWARD LENGTH=613 54 2e-08
AT1G20920.1 | chr1:7285342-7288842 FORWARD LENGTH=1167 53 3e-08
AT3G09620.1 | chr3:2949152-2952205 REVERSE LENGTH=990 51 1e-07
AT3G22330.1 | chr3:7892641-7895145 FORWARD LENGTH=617 51 1e-07
AT2G47330.1 | chr2:19429083-19431617 REVERSE LENGTH=761 50 3e-07
AT3G22310.1 | chr3:7887382-7889806 FORWARD LENGTH=611 49 5e-07
>AT1G55150.1 | chr1:20574634-20577141 FORWARD LENGTH=502
Length = 501
Score = 108 bits (271), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/55 (92%), Positives = 54/55 (98%)
Query: 11 APGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKG 65
A GDGPIVLVLAPTRELAVQIQQEA+KFG+SSKIK+TCIYGGVPKGPQVRDLQKG
Sbjct: 168 AHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKG 222
>AT5G63120.2 | chr5:25318967-25322071 REVERSE LENGTH=592
Length = 591
Score = 89.7 bits (221), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/52 (75%), Positives = 47/52 (90%)
Query: 14 DGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKG 65
DGPIVL+LAPTRELAVQIQ+E+ KFG S ++STCIYGG PKGPQ+RDL++G
Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRG 288
>AT3G01540.2 | chr3:213077-216142 REVERSE LENGTH=620
Length = 619
Score = 84.0 bits (206), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 15 GPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGS 66
GP +LVL+PTRELA QIQ+EA KFG SS+I TC+YGG PKGPQ+RDL++G+
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGA 281
>AT3G06480.1 | chr3:1985697-1989666 REVERSE LENGTH=1089
Length = 1088
Score = 79.3 bits (194), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/53 (64%), Positives = 45/53 (84%)
Query: 14 DGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGS 66
+GP VL+LAPTRELA QIQ EA +FG SS+I TC+YGG PKGPQ+++L++G+
Sbjct: 506 NGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGA 558
>AT5G14610.1 | chr5:4711271-4714713 FORWARD LENGTH=713
Length = 712
Score = 76.3 bits (186), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 42/51 (82%)
Query: 15 GPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKG 65
GP +LVL+PTRELA QIQ EA KFG SSKI C+YGG PKGPQ++++++G
Sbjct: 301 GPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERG 351
>AT3G58570.1 | chr3:21657099-21660352 FORWARD LENGTH=647
Length = 646
Score = 55.5 bits (132), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 16 PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKG 65
P+ ++L+PTRELA QI EA KF + +K YGG P Q+R+L++G
Sbjct: 225 PLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERG 274
>AT2G42520.1 | chr2:17705382-17708744 FORWARD LENGTH=634
Length = 633
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 16 PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKG 65
P+ ++L+PTRELA QI EA KF + +K YGG P Q+R+L++G
Sbjct: 238 PLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERG 287
>AT1G31970.1 | chr1:11479921-11482707 FORWARD LENGTH=538
Length = 537
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 16 PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKG 65
P LVL+PTRELAVQI + G +KS C+YGG KGPQ+ ++ G
Sbjct: 192 PTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSG 241
>AT3G58510.1 | chr3:21640608-21643464 FORWARD LENGTH=613
Length = 612
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 16 PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKG 65
P ++L+PTRELA QI EA KF + +K YGG P Q+R+L++G
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279
>AT1G20920.1 | chr1:7285342-7288842 FORWARD LENGTH=1167
Length = 1166
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 13 GDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGSLSFLC 71
GDGPI LV+APTREL QI + KF I+ +YGG Q+ +L++G+ +C
Sbjct: 600 GDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVC 658
>AT3G09620.1 | chr3:2949152-2952205 REVERSE LENGTH=990
Length = 989
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 13 GDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGSLSFLC 71
GDGPI LV+APTREL QI + KF + I +YGG Q+ +L++G+ +C
Sbjct: 467 GDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVC 525
>AT3G22330.1 | chr3:7892641-7895145 FORWARD LENGTH=617
Length = 616
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 13 GDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKG 65
G P+ LVLAPTRELA Q+++E + ++ + + C+YGG P G Q+R L G
Sbjct: 176 GRNPLCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRQLDYG 226
>AT2G47330.1 | chr2:19429083-19431617 REVERSE LENGTH=761
Length = 760
Score = 49.7 bits (117), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 14 DGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKG 65
+GPI ++ APTRELA QI EA KF + ++ + +YGG+ K Q ++L+ G
Sbjct: 300 EGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAG 351
>AT3G22310.1 | chr3:7887382-7889806 FORWARD LENGTH=611
Length = 610
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 13 GDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKG 65
G P LVLAPTRELA Q+++E + S + + C+YGG P G Q+R+L G
Sbjct: 188 GKNPQCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMRELNYG 238
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,458,238
Number of extensions: 41945
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 15
Length of query: 71
Length of database: 11,106,569
Length adjustment: 43
Effective length of query: 28
Effective length of database: 9,927,681
Effective search space: 277975068
Effective search space used: 277975068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)