Os01g0194300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NPR1.
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Os01g0194300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NPR1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.52 | 0.478 | 11.4 | 1.69 | 1.42 | 0.12 | -0.476 | -2.87 | 0.768 | 0.322 | 1.164 | 18887 | -- | -- |
| 119.02 | 0.508 | 11.3 | 1.43 | 1.44 | 0.342 | -0.394 | -- | 0.752 | 0.286 | 2.2 | 47520 | -- | -- |
| 104.5 | 0.476 | 11.4 | 1.71 | 1.42 | 0.119 | -- | -2.85 | 0.768 | 0.321 | 1.198 | 18889 | -- | -- |
| 118.82 | 0.508 | 11.3 | 1.4 | 1.42 | 0.478 | -- | -- | 0.751 | 0.356 | 2.8 | 40452 | -- | -- |
| 231.05 | 0.708 | 11.3 | 1.74 | -- | 0.111 | -- | -3.09 | 0.774 | -- | 1.1 | 18539 | -- | -- |
| 119.9 | 0.513 | 11.3 | 1.59 | 1.43 | -- | -0.429 | -- | 0.784 | 0.339 | -- | -- | -- | -- |
| 120.69 | 0.514 | 11.3 | 1.61 | 1.43 | -- | -- | -- | 0.786 | 0.338 | -- | -- | -- | -- |
| 239.62 | 0.724 | 11.3 | 1.52 | -- | 0.333 | -- | -- | 0.801 | -- | 2.8 | 40452 | -- | -- |
| 140.25 | 0.552 | 11.4 | -- | 1.42 | 1.24 | -- | -- | 0.35 | 0.308 | 5.6 | 47520 | -- | -- |
| 249.27 | 0.738 | 11.3 | 1.66 | -- | -- | -- | -- | 0.808 | -- | -- | -- | -- | -- |
| 188.95 | 0.643 | 11.4 | -- | 1.45 | -- | -- | -- | 0.606 | 0.396 | -- | -- | -- | -- |
| 266.3 | 0.76 | 11.4 | -- | -- | 1.33 | -- | -- | 0.344 | -- | 5.501 | 47520 | -- | -- |
| 321.71 | 0.837 | 11.3 | -- | -- | -- | -- | -- | 0.624 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.95 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 2 | 94.96 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 3 | 95.30 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 10 | 95.52 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 13 | 95.63 | wind | 7.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 21 | 95.84 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 23 | 95.85 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 28 | 95.95 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 40 | 96.06 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 48 | 96.12 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 49 | 96.12 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 57 | 96.17 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 209 | 97.93 | wind | 9.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 309 | 99.05 | wind | 9.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 335 | 99.30 | wind | 9.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 355 | 99.47 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 455 | 99.91 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 665 | 100.48 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 960 | 101.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 6 |
| 990 | 101.47 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 9 |