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Os01g0180400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF581 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.86 (0.0379) R2 : 0.392
β1 : 1.44 (0.146) R2dD : 0.103 R2D : 0.00591
β2 : 0.741 (0.0954) R2dC : 0.0827 R2C : 0.0668
β3 : -1.2 (0.0928) R2dE : 0.281 R2E : 0.177
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.206 (0.0851) R2dN8 : 0.0117 R2N8 : 0.0495
σ : 0.697
deviance : 223.98
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C
peak time of C : 4.21
E
wheather : temperature
threshold : 20.05
memory length : 1402
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22.7
open length of G : 3.23

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
210.93 0.682 7.81 1.48 0.742 -1.11 1.42 1.06 -0.15 4.83 20.07 1392 23 2.8
219.11 0.689 7.82 1.42 0.71 -1.11 1.52 -- -0.136 4.69 20.04 1395 23 3.05
215.47 0.684 7.81 1.49 0.751 -1.11 -- 1.16 -0.152 4.36 20.04 1389 23 3.02
223.98 0.697 7.86 1.44 0.741 -1.2 -- -- -0.206 4.21 20.05 1402 22.7 3.23
245.04 0.729 7.82 1.49 -- -1.09 -- 1.12 -0.136 -- 20.04 1368 23.1 3.13
291.17 0.8 7.94 0.551 0.687 -- 1.78 -- -0.599 4.62 -- -- -- --
298.27 0.809 7.95 0.538 0.704 -- -- -- -0.608 3.82 -- -- -- --
252.15 0.74 7.87 1.35 -- -1.14 -- -- -0.203 -- 20.1 1380 23 3.18
248.39 0.734 7.89 -- 0.771 -0.999 -- -- -0.344 3.68 20.71 1406 22.6 3
325.52 0.843 7.95 0.567 -- -- -- -- -0.59 -- -- -- -- --
305.91 0.818 7.96 -- 0.714 -- -- -- -0.668 3.82 -- -- -- --
276.18 0.774 7.89 -- -- -0.917 -- -- -0.361 -- 20.64 1364 23.2 3.05
334.01 0.853 7.96 -- -- -- -- -- -0.653 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.73 temperature 20 1440 > th dose independent rect. 23 2
6 215.57 temperature 20 1440 < th dose independent rect. 23 4
44 218.90 radiation 10 720 < th dose dependent rect. 11 20
48 219.30 radiation 10 1440 < th dose dependent rect. 9 9
49 219.73 radiation 10 1440 < th dose dependent rect. 12 6
50 219.73 radiation 10 1440 < th dose dependent rect. 9 12
67 220.08 radiation 10 1440 < th dose dependent rect. 9 19
71 220.18 radiation 10 1440 < th dose dependent rect. 12 9
84 220.53 radiation 10 1440 < th dose dependent sin 19 NA
86 220.56 radiation 10 1440 < th dose dependent rect. 12 16
122 221.29 radiation 10 720 > th dose independent rect. 11 5
142 221.72 temperature 20 720 > th dose independent rect. 20 14
149 221.88 humidity 90 720 < th dose dependent rect. 20 20
157 222.00 humidity 80 720 > th dose independent rect. 6 13
169 222.38 temperature 20 720 > th dose independent sin 9 NA
207 223.28 radiation 10 720 > th dose independent rect. 11 19
237 223.62 humidity 80 720 < th dose independent rect. 23 18
253 223.92 radiation 10 720 > th dose independent rect. 11 21
301 224.94 humidity 80 720 > th dose independent rect. 7 10
309 225.01 humidity 80 720 > th dose independent sin 0 NA
355 225.88 radiation 10 1440 < th dose dependent rect. 13 1
453 227.34 radiation 10 1440 < th dose independent rect. 15 2
457 227.43 radiation 10 720 > th dose independent sin 20 NA
459 227.50 radiation 20 1440 < th dose dependent rect. 15 2
482 227.83 humidity 80 720 < th dose independent sin 1 NA
501 228.13 radiation 1 720 > th dose dependent rect. 11 21
529 228.38 temperature 20 1440 > th dose independent rect. 5 2
566 228.75 radiation 40 1440 < th dose dependent rect. 15 2
568 228.77 temperature 20 1440 < th dose independent sin 10 NA
577 228.94 radiation 1 1440 > th dose dependent rect. 15 2
599 229.14 radiation 20 720 < th dose independent rect. 11 21
618 229.35 radiation 10 1440 > th dose independent rect. 11 1
625 229.40 radiation 40 1440 < th dose dependent rect. 15 6
637 229.46 humidity 60 720 > th dose dependent rect. 6 22
641 229.50 humidity 90 720 < th dose dependent rect. 9 7
654 229.53 humidity 80 720 < th dose independent rect. 9 7
736 230.13 humidity 80 720 < th dose independent rect. 11 5
741 230.15 humidity 90 720 < th dose dependent rect. 11 4
749 230.19 radiation 40 1440 < th dose dependent rect. 15 13
776 230.30 humidity 90 720 < th dose dependent sin 1 NA
836 230.68 humidity 90 720 < th dose dependent rect. 9 23
848 230.79 humidity 60 720 > th dose dependent sin 0 NA
849 230.81 temperature 20 1440 < th dose independent rect. 5 2
863 230.96 humidity 90 720 < th dose dependent no NA NA
871 231.05 radiation 20 720 < th dose independent sin 13 NA
872 231.05 humidity 90 720 < th dose dependent rect. 2 23
883 231.23 humidity 90 720 < th dose dependent rect. 5 23
892 231.31 atmosphere 995 43200 < th dose independent rect. 22 12
900 231.36 atmosphere 995 43200 > th dose independent rect. 21 14
908 231.39 atmosphere 995 43200 > th dose independent rect. 19 16
927 231.49 atmosphere 995 43200 > th dose independent rect. 22 12
939 231.55 humidity 60 720 > th dose dependent rect. 6 12
945 231.59 atmosphere 995 43200 > th dose independent rect. 4 4
990 231.97 humidity 90 720 < th dose dependent rect. 11 23
991 231.98 radiation 1 720 > th dose dependent rect. 11 5
992 231.98 humidity 60 720 > th dose dependent rect. 5 14