BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0180400 Os01g0180400|AK108226
         (109 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0180400  Protein of unknown function DUF581 family protein   159   4e-40
Os02g0174800  Protein of unknown function DUF581 family protein    67   3e-12

>Os01g0180400 Protein of unknown function DUF581 family protein
          Length = 109

 Score =  159 bits (402), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/98 (80%), Positives = 79/98 (80%)

Query: 12  VTEAPTESYWVVKCDXXXXXXXXXXDFLSSCFTCKKKLEGNDIYIYRGEKAFCSANCRDQ 71
           VTEAPTESYWVVKCD          DFLSSCFTCKKKLEGNDIYIYRGEKAFCSANCRDQ
Sbjct: 12  VTEAPTESYWVVKCDAGAAPASGGGDFLSSCFTCKKKLEGNDIYIYRGEKAFCSANCRDQ 71

Query: 72  QIPIEEEAENNTTIVXXXXXXXXXLHEDIFMAGMFVAT 109
           QIPIEEEAENNTTIV         LHEDIFMAGMFVAT
Sbjct: 72  QIPIEEEAENNTTIVSSPPSSCSSLHEDIFMAGMFVAT 109



>Os02g0174800 Protein of unknown function DUF581 family protein
          Length = 218

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 3/61 (4%)

Query: 21  WVVKCDXXXXXXXXXXDFLSSCFTCKKKLEGNDIYIYRGEKAFCSANCRDQQIPIEEEAE 80
           W+V+ D          DFLS CF C K+L+G DIY+YRGEKAFCS+ CR  Q+ +++ A+
Sbjct: 132 WLVEADEEPAPAA---DFLSRCFLCDKRLDGLDIYMYRGEKAFCSSECRCHQMLMDDHAD 188

Query: 81  N 81
           N
Sbjct: 189 N 189



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,626,190
Number of extensions: 77992
Number of successful extensions: 106
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)