BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0180400 Os01g0180400|AK108226
(109 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249 62 7e-11
AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148 60 2e-10
AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223 60 3e-10
AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264 57 3e-09
AT1G19200.1 | chr1:6625104-6625856 REVERSE LENGTH=216 55 1e-08
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 53 3e-08
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 52 6e-08
AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178 52 7e-08
AT5G11460.1 | chr5:3657064-3658388 REVERSE LENGTH=345 52 7e-08
AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151 52 9e-08
AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114 49 4e-07
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 49 4e-07
AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127 49 8e-07
AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127 46 4e-06
AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127 46 4e-06
AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268 45 8e-06
>AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249
Length = 248
Score = 61.6 bits (148), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 38 FLSSCFTCKKKLEGNDIYIYRGEKAFCSANCRDQQIPIEEEAE 80
FL+SC+ C+KKL G DI+IYRGEKAFCS CR I +E E
Sbjct: 182 FLNSCYLCRKKLHGQDIFIYRGEKAFCSTECRSSHIANDERKE 224
>AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148
Length = 147
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 37 DFLSSCFTCKKKL-EGNDIYIYRGEKAFCSANCRDQQIPIEEEAENN 82
DFL SC CK+ L G DIY+YRG++AFCS CR QQI ++E E
Sbjct: 77 DFLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDERKEKK 123
>AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223
Length = 222
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 37 DFLSSCFTCKKKLEGNDIYIYRGEKAFCSANCRDQQIPIEEEAENNTTIV 86
+FLSSC CKKKL+G DIY+Y+GE FCSA CR QI +E E T V
Sbjct: 149 EFLSSCCLCKKKLQGKDIYMYKGEMGFCSAECRSVQIMNDERQEQCKTQV 198
>AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264
Length = 263
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Query: 38 FLSSCFTCKKKL-EGNDIYIYRGEKAFCSANCRDQQIPIEE 77
FLS CFTCKK L + DIYIYRGEK FCS+ CR Q++ +++
Sbjct: 220 FLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 260
>AT1G19200.1 | chr1:6625104-6625856 REVERSE LENGTH=216
Length = 215
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 37 DFLSSCFTCKKKLEGNDIYIYRGEKAFCSANCRDQQI 73
DFL+SC CKKKL+G DIY+Y+G++ FCS CR +I
Sbjct: 149 DFLTSCCLCKKKLQGKDIYMYKGDEGFCSKECRSLKI 185
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 38 FLSSCFTCKKKLEGN-DIYIYRGEKAFCSANCRDQQIPIEEEAENNTTI 85
FL SCF CKK+L N DI++YRG+ FCS CR++QI +E E ++
Sbjct: 76 FLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERDEAKEKKQSL 124
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 38 FLSSCFTCKKKL-EGNDIYIYRGEKAFCSANCRDQQIPIEEEAENNTTIV 86
FL SC C++ L G DIY+YRG+KAFCS+ CR +Q+ +E E +
Sbjct: 89 FLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQDERKEKGKSAA 138
>AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178
Length = 177
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 38 FLSSCFTCKKKLEGN-DIYIYRGEKAFCSANCRDQQIPIEEEAENNTTI 85
FL SCF CKK L N DIY+YRG+ FCS CR +QI +E E +
Sbjct: 97 FLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERDEAKEKKQNL 145
>AT5G11460.1 | chr5:3657064-3658388 REVERSE LENGTH=345
Length = 344
Score = 51.6 bits (122), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 37 DFLSSCFTCKKKL-EGNDIYIYRGEKAFCSANCRDQQI 73
DFLS C+ C KKL G DIY+Y G KAFCS+ CR ++I
Sbjct: 270 DFLSFCYGCSKKLGMGEDIYMYSGYKAFCSSECRSKEI 307
>AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151
Length = 150
Score = 51.6 bits (122), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 38 FLSSCFTCKKKL-EGNDIYIYRGEKAFCSANCRDQQIPIEEE 78
FL CF C++KL DIY+Y+G++AFCS CR +Q+ ++EE
Sbjct: 68 FLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDEE 109
>AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114
Length = 113
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 37 DFLSSCFTCKKKL-EGNDIYIYRGEKAFCSANCRDQQIPIEEE 78
DFL +C C + L DIY+YRG AFCS CR++QI ++E+
Sbjct: 56 DFLKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLDEK 98
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 38 FLSSCFTCKKKLEGN-DIYIYRGEKAFCSANCRDQQIPIEEEAE 80
FL SC C+K L N DI++YRG+KAFCS CR++QI +E E
Sbjct: 16 FLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKE 59
>AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127
Length = 126
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 38 FLSSCFTCKKKL-EGNDIYIYRGEKAFCSANCRDQQIPIEEEAENNTTIV 86
FL +C CK+ L G DIY+Y+G+ AFCS CR+QQ+ +E N ++
Sbjct: 73 FLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQMEHDEGKTRNRVVL 122
>AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127
Length = 126
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 38 FLSSCFTCKKKL-EGNDIYIYRGEKAFCSANCRDQQIPIEEEAE 80
FL +C C K+L + D+Y+YRG+ FCS CR+ Q+ I++ E
Sbjct: 42 FLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKE 85
>AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127
Length = 126
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 38 FLSSCFTCKKKL-EGNDIYIYRGEKAFCSANCRDQQIPIEEEAE 80
FL +C C K+L + D+Y+YRG+ FCS CR+ Q+ I++ E
Sbjct: 42 FLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKE 85
>AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268
Length = 267
Score = 45.1 bits (105), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 38 FLSSCFTCKKKL-EGNDIYIYRGEKAFCSANCRDQQIPIEEE 78
FLS C CKK L +DI++YRG++AFCS+ CR ++ + EE
Sbjct: 222 FLSCCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSEE 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,799,920
Number of extensions: 57803
Number of successful extensions: 94
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 17
Length of query: 109
Length of database: 11,106,569
Length adjustment: 78
Effective length of query: 31
Effective length of database: 8,968,121
Effective search space: 278011751
Effective search space used: 278011751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)