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Os01g0180300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipoprotein, type 6 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0334) R2 : 0.867
β1 : -2.08 (0.122) R2dD : 0.0906 R2D : 0.00973
β2 : 5.67 (0.133) R2dC : 1.51 R2C : 0.592
β3 : 3.05 (0.193) R2dE : 0.212 R2E : -0.752
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.639 (0.0716) R2dN8 : 0.0325 R2N8 : -0.017
σ : 0.612
deviance : 172.85
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C
peak time of C : 22.1
E
wheather : temperature
threshold : 0.5617
memory length : 409
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.2
open length of G : 18.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.01 0.605 11.1 -1.78 5.59 2.98 2.34 2.35 -0.588 22.2 8.578 340 22.3 17.2
168.35 0.604 11.2 -2 5.71 3.1 1.29 -- -0.634 22.1 6.726 342 22.4 17.2
171.78 0.61 11.2 -2.17 5.74 3.16 -- -1 -0.65 22.1 0.7557 406 21.2 18.4
172.85 0.612 11.2 -2.08 5.67 3.05 -- -- -0.639 22.1 0.5617 409 21.2 18.4
902.65 1.4 11 -3.04 -- 4.29 -- -0.326 -0.753 -- -26.91 1149 22.4 19.5
262.96 0.76 11.1 -1.63 4.01 -- 1.06 -- -0.383 21.9 -- -- -- --
267.34 0.766 11.1 -1.67 4 -- -- -- -0.385 21.9 -- -- -- --
236.24 0.716 10.7 -1.43 -- 3.96 -- -- -0.0477 -- -186 560 6.27 21.6
276.9 0.775 11.1 -- 5.51 2.35 -- -- -0.321 22.1 -3.208 285 23.1 17.2
1227.55 1.64 10.9 -1.63 -- -- -- -- -0.385 -- -- -- -- --
341.11 0.864 11 -- 4 -- -- -- -0.199 21.9 -- -- -- --
278.52 0.777 10.9 -- -- 3.75 -- -- -0.266 -- -218.4 574 7.03 20.2
1297.45 1.68 10.9 -- -- -- -- -- -0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.77 temperature 10.0 270 > th dose dependent rect. 23 17
2 169.82 temperature 30.0 90 < th dose independent rect. 5 8
8 175.78 temperature 30.0 90 < th dose independent rect. 5 10
11 176.56 atmosphere 995.0 90 > th dose dependent rect. 5 18
13 177.60 temperature 30.0 270 < th dose dependent rect. 4 19
20 179.40 atmosphere 995.0 90 > th dose dependent rect. 5 9
23 179.69 temperature 30.0 270 < th dose independent rect. 3 9
24 180.03 atmosphere 995.0 10 > th dose dependent rect. 6 18
27 180.40 atmosphere 995.0 90 > th dose dependent rect. 5 20
31 181.50 atmosphere 995.0 10 > th dose dependent rect. 6 20
66 186.10 temperature 30.0 270 < th dose dependent rect. 5 6
70 186.97 radiation 40.0 90 < th dose independent rect. 5 8
71 187.21 atmosphere 995.0 10 > th dose dependent rect. 6 9
78 187.37 atmosphere 1000.0 90 > th dose independent rect. 5 8
80 187.62 temperature 30.0 90 < th dose independent rect. 5 20
82 187.86 atmosphere 1000.0 90 > th dose independent rect. 5 20
103 189.21 atmosphere 1000.0 10 > th dose independent rect. 6 20
107 189.71 atmosphere 1000.0 10 > th dose independent rect. 6 18
131 191.11 radiation 40.0 270 < th dose dependent rect. 5 18
133 191.14 wind 9.0 90 < th dose independent rect. 13 16
139 191.34 radiation 1.0 90 < th dose dependent sin 5 NA
142 191.49 radiation 40.0 270 < th dose independent rect. 3 21
148 191.79 precipitation 0.1 90 < th dose independent rect. 5 8
149 191.79 precipitation 0.1 90 < th dose dependent rect. 5 8
159 192.03 temperature 10.0 90 > th dose dependent rect. 13 16
160 192.10 temperature 10.0 90 > th dose independent rect. 5 8
162 192.10 atmosphere 1015.0 90 < th dose independent rect. 5 8
163 192.10 temperature 10.0 90 > th dose independent rect. 13 16
166 192.19 radiation 40.0 270 < th dose independent rect. 4 19
188 192.87 radiation 1.0 90 > th dose independent sin 5 NA
190 192.94 radiation 1.0 90 < th dose independent sin 5 NA
196 193.29 radiation 1.0 90 > th dose independent rect. 4 9
220 193.65 temperature 10.0 270 > th dose dependent rect. 7 22
233 194.07 radiation 40.0 90 < th dose independent rect. 13 16
248 194.58 temperature 10.0 270 > th dose dependent rect. 10 18
252 194.65 temperature 10.0 270 > th dose dependent rect. 23 5
261 194.86 wind 9.0 90 < th dose independent rect. 5 8
262 194.86 temperature 10.0 270 > th dose dependent rect. 11 16
266 195.05 temperature 30.0 30 < th dose dependent rect. 6 7
276 195.17 precipitation 0.1 90 < th dose independent rect. 13 16
278 195.17 precipitation 0.1 90 < th dose dependent rect. 13 16
287 195.40 atmosphere 1015.0 270 < th dose dependent rect. 23 18
297 195.73 atmosphere 1015.0 90 < th dose dependent rect. 1 18
302 196.02 temperature 10.0 270 > th dose dependent rect. 22 7
303 196.02 temperature 10.0 270 > th dose dependent rect. 8 9
305 196.09 wind 7.0 270 < th dose independent rect. 23 17
308 196.10 radiation 40.0 270 < th dose dependent rect. 16 7
316 196.22 radiation 20.0 270 < th dose independent rect. 16 7
341 196.85 atmosphere 995.0 270 > th dose independent rect. 16 7
365 197.36 radiation 40.0 270 < th dose dependent rect. 5 6
378 197.70 atmosphere 1015.0 90 < th dose dependent rect. 1 16
394 198.00 atmosphere 1000.0 10 > th dose independent rect. 6 8
405 198.14 atmosphere 1015.0 10 < th dose dependent rect. 2 17
406 198.17 radiation 1.0 90 < th dose independent rect. 1 6
411 198.24 atmosphere 1015.0 270 < th dose independent rect. 23 17
428 198.46 atmosphere 1015.0 270 < th dose dependent rect. 9 8
434 198.52 temperature 10.0 270 > th dose independent rect. 16 7
436 198.52 temperature 10.0 270 > th dose independent rect. 23 17
439 198.56 wind 5.0 270 < th dose independent rect. 23 5
442 198.58 precipitation 0.1 270 < th dose independent rect. 3 9
443 198.58 precipitation 0.1 270 < th dose dependent rect. 3 9
461 198.82 radiation 1.0 90 < th dose independent rect. 1 14
472 198.94 temperature 30.0 270 < th dose dependent rect. 17 18
474 198.96 temperature 10.0 270 > th dose independent rect. 23 5
475 198.96 temperature 30.0 270 < th dose independent rect. 23 5
476 198.96 humidity 50.0 270 > th dose independent rect. 23 5
479 198.96 atmosphere 995.0 270 > th dose independent rect. 23 5
480 198.96 radiation 1.0 270 < th dose independent rect. 23 5
485 198.96 atmosphere 1015.0 90 < th dose independent rect. 13 16
486 198.96 temperature 10.0 270 > th dose independent rect. 4 19
487 198.96 radiation 1.0 270 < th dose dependent rect. 23 5
493 198.97 radiation 1.0 90 < th dose independent rect. 1 12
502 199.08 radiation 1.0 90 < th dose dependent rect. 1 6
503 199.09 temperature 30.0 270 < th dose independent rect. 17 17
512 199.14 atmosphere 1015.0 270 < th dose independent rect. 23 5
514 199.15 radiation 1.0 90 < th dose dependent rect. 1 14
519 199.21 temperature 10.0 270 > th dose independent rect. 3 9
520 199.21 atmosphere 995.0 270 > th dose independent rect. 3 9
521 199.21 atmosphere 1015.0 270 < th dose independent rect. 3 9
532 199.29 radiation 1.0 90 < th dose dependent rect. 1 12
533 199.31 temperature 25.0 270 > th dose independent rect. 23 18
536 199.34 radiation 40.0 270 < th dose dependent rect. 17 17
558 199.61 wind 9.0 270 < th dose independent rect. 16 7
575 199.74 precipitation 0.1 270 < th dose independent rect. 23 5
576 199.74 precipitation 0.1 270 < th dose dependent rect. 23 5
582 199.82 wind 9.0 270 < th dose dependent rect. 23 5
597 199.98 wind 7.0 270 < th dose independent rect. 22 7
608 200.07 radiation 1.0 270 < th dose dependent rect. 22 7
614 200.13 temperature 10.0 270 > th dose independent rect. 22 7
615 200.13 temperature 30.0 270 < th dose independent rect. 22 7
616 200.13 humidity 50.0 270 > th dose independent rect. 22 7
619 200.13 atmosphere 995.0 270 > th dose independent rect. 22 7
620 200.13 radiation 20.0 270 < th dose independent rect. 22 7
623 200.13 temperature 10.0 270 > th dose independent rect. 5 17
627 200.14 radiation 40.0 270 < th dose dependent rect. 22 7
629 200.15 radiation 20.0 270 < th dose dependent rect. 22 7
634 200.19 radiation 1.0 270 < th dose independent rect. 22 7
636 200.19 precipitation 0.1 270 < th dose independent rect. 23 17
638 200.19 precipitation 0.1 270 < th dose dependent rect. 23 17
647 200.32 humidity 50.0 90 > th dose independent rect. 5 8
662 200.47 radiation 20.0 270 < th dose independent rect. 18 16
676 200.63 wind 9.0 270 < th dose independent rect. 11 17
685 200.75 wind 5.0 270 < th dose independent rect. 24 3
693 200.90 humidity 50.0 270 > th dose independent rect. 17 6
713 201.12 humidity 80.0 90 > th dose independent rect. 1 4
714 201.12 wind 9.0 270 < th dose independent rect. 3 9
725 201.19 radiation 10.0 10 < th dose dependent rect. 2 4
749 201.35 precipitation 0.1 270 < th dose independent rect. 22 7
750 201.35 precipitation 0.1 270 < th dose dependent rect. 22 7
761 201.52 wind 9.0 270 < th dose dependent rect. 24 3
768 201.56 atmosphere 1015.0 270 < th dose independent rect. 22 7
790 201.81 temperature 30.0 90 < th dose independent rect. 19 18
804 201.87 temperature 10.0 270 > th dose independent rect. 24 3
805 201.87 temperature 30.0 270 < th dose independent rect. 24 3
806 201.87 humidity 50.0 270 > th dose independent rect. 24 3
809 201.87 atmosphere 995.0 270 > th dose independent rect. 24 3
810 201.87 atmosphere 1015.0 270 < th dose independent rect. 24 3
811 201.87 radiation 1.0 270 < th dose independent rect. 24 3
817 201.87 temperature 10.0 270 > th dose independent rect. 3 21
818 201.87 radiation 1.0 270 < th dose dependent rect. 24 3
834 201.93 radiation 10.0 10 < th dose dependent rect. 24 6
852 202.02 precipitation 0.1 270 < th dose independent rect. 24 3
853 202.02 precipitation 0.1 270 < th dose dependent rect. 24 3
970 202.70 precipitation 0.1 270 < th dose independent rect. 4 19
971 202.70 precipitation 0.1 270 < th dose dependent rect. 4 19
976 202.73 wind 9.0 270 < th dose independent rect. 4 19
986 202.78 precipitation 0.1 270 < th dose independent rect. 16 7
987 202.78 precipitation 0.1 270 < th dose dependent rect. 16 7
1000 202.81 temperature 10.0 270 > th dose independent rect. 11 17