BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0180300 Os01g0180300|AK120377
(766 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16000.1 | chr3:5431041-5433613 REVERSE LENGTH=727 253 4e-67
>AT3G16000.1 | chr3:5431041-5433613 REVERSE LENGTH=727
Length = 726
Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 194/584 (33%), Positives = 322/584 (55%), Gaps = 4/584 (0%)
Query: 125 ESSLPVTQEQTPGNPLSGLLNAIAVAASGVLAGLYGTSQQEKKALESVVSSMESKLAENE 184
E+ + V E T NP LLN + + ++GVL LY ++Q+ KA E + S++++L + E
Sbjct: 110 ETEVAVVSEGTSPNPFLALLNGLGIFSAGVLGALYALARQDTKAAEETIESLKNQLKDRE 169
Query: 185 AAISLMRENYEKRLLDQQTAQKKQAMKFQEQEASLLDQXXXXXXXXXXXXEEFRREKTXX 244
A+ L +++E +L +Q +KK+ K +E++ SL++Q E EK
Sbjct: 170 RALVLKEKDFEAKLQHEQEERKKEVEKAKEEQLSLINQLNSAKDLVTELGRELSSEKKLC 229
Query: 245 XXXXXXXXXXXXXXXQAGDDKDVLEAKLKEKLGDVNILQEKVSLLSQEIDNKGIRIREXX 304
+AG+DK+ LE KL+EKL V LQ++++LLS E+ + + +
Sbjct: 230 EKLKDQIESLENSLSKAGEDKEALETKLREKLDLVEGLQDRINLLSLELKDSEEKAQRFN 289
Query: 305 XXXXXKEADYRNLCSFSDQTKESLELAEAK--IQQLEEEVHRTRNXXXXXXXXXXXXNEE 362
KEA+ + L S QT S +LAEAK I+Q +EE+ RT++ N
Sbjct: 290 ASLAKKEAELKELNSIYTQT--SRDLAEAKLEIKQQKEELIRTQSELDSKNSAIEELNTR 347
Query: 363 LQALNSAKNEAEEKLSELTKDYTDLKXXXXXXXXXXXXXXXXKDNMIKQXXXXXXXXXXX 422
+ L + K +KL ++KDY+ LK K+ I+Q
Sbjct: 348 ITTLVAEKESYIQKLDSISKDYSALKLTSETQAAADAELISRKEQEIQQLNENLDRALDD 407
Query: 423 XXXXRENIAALNKELDATKAMLENEVAAVKSLRESLQSTEEALTDSRSEVSKLSVELDEA 482
++ +A L ++ + +K ML+ E+ VK+LR L+ T++ L SR VS L LDE+
Sbjct: 408 VNKSKDKVADLTEKYEDSKRMLDIELTTVKNLRHELEGTKKTLQASRDRVSDLETMLDES 467
Query: 483 NRMNQDLVLQISKLQDEFNEMQEGLTNKLGEVESVSKALSDELVSVKEMVHKGQEELEAT 542
+ L +++ + +E+ E +E L + ++ + EL K++ + ++ELE
Sbjct: 468 RALCSKLESELAIVHEEWKEAKERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGV 527
Query: 543 SNELASIVEARDNLKKELLDVFKKLESTSQELVDERKTVTTLNRELEALVKQLQMDSEAR 602
++EL +L+KEL++++KK+E++++EL +E+KTV +LN+E++ + KQ+ M+ EAR
Sbjct: 528 THELKESSVKNQSLQKELVEIYKKVETSNKELEEEKKTVLSLNKEVKGMEKQILMEREAR 587
Query: 603 KALEADLDEATKSLDEMNRSALSLSKELEETNSRKDTLEAEKKMLSKALAEQQKITTEAH 662
K+LE DL+EA KSLDEMN++ LS+ELE+ N+ LE EK++L ++L E + + EA
Sbjct: 588 KSLETDLEEAVKSLDEMNKNTSILSRELEKVNTHASNLEDEKEVLQRSLGEAKNASKEAK 647
Query: 663 ENTEDAQNLISRLQTEKESFEMRARHLEEELALAKGEILRLRRQ 706
EN EDA L+ L E+E E + + LEE+L AKGEILR+R Q
Sbjct: 648 ENVEDAHILVMSLGKEREVLEKKVKKLEEDLGSAKGEILRMRSQ 691
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.302 0.120 0.296
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,474,751
Number of extensions: 387736
Number of successful extensions: 4089
Number of sequences better than 1.0e-05: 112
Number of HSP's gapped: 3765
Number of HSP's successfully gapped: 231
Length of query: 766
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 660
Effective length of database: 8,200,473
Effective search space: 5412312180
Effective search space used: 5412312180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 116 (49.3 bits)