Os01g0174000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor HY5-like (HY5 homolog). Splice isoform 2.
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Os01g0174000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor HY5-like (HY5 homolog). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.72 | 0.633 | 10.5 | 1.13 | 1.79 | -1.49 | 0.419 | -0.574 | 0.267 | 9.52 | 20.31 | 1490 | -- | -- |
| 181.28 | 0.627 | 10.5 | 1.22 | 1.78 | -1.35 | 0.539 | -- | 0.313 | 9.5 | 20.7 | 1428 | -- | -- |
| 181.18 | 0.627 | 10.5 | 1.11 | 1.78 | -1.41 | -- | -0.621 | 0.283 | 9.53 | 20.8 | 1507 | -- | -- |
| 181.83 | 0.628 | 10.5 | 1.23 | 1.78 | -1.33 | -- | -- | 0.32 | 9.54 | 20.9 | 1540 | -- | -- |
| 330.83 | 0.847 | 10.5 | 1.21 | -- | -1.55 | -- | -0.259 | 0.42 | -- | 21.4 | 788 | -- | -- |
| 223.29 | 0.701 | 10.6 | 0.651 | 1.79 | -- | 0.544 | -- | -0.0187 | 9.58 | -- | -- | -- | -- |
| 224.4 | 0.701 | 10.6 | 0.672 | 1.79 | -- | -- | -- | -0.0178 | 9.58 | -- | -- | -- | -- |
| 331.27 | 0.848 | 10.5 | 1.21 | -- | -1.51 | -- | -- | 0.4 | -- | 21.3 | 788 | -- | -- |
| 214.24 | 0.682 | 10.5 | -- | 1.78 | -0.812 | -- | -- | 0.0913 | 9.47 | 21.3 | 1427 | -- | -- |
| 412.99 | 0.95 | 10.6 | 0.658 | -- | -- | -- | -- | -0.0137 | -- | -- | -- | -- | -- |
| 236.28 | 0.719 | 10.6 | -- | 1.79 | -- | -- | -- | -0.0926 | 9.55 | -- | -- | -- | -- |
| 353.5 | 0.876 | 10.5 | -- | -- | -1.17 | -- | -- | 0.327 | -- | 24.8 | 671 | -- | -- |
| 424.4 | 0.962 | 10.6 | -- | -- | -- | -- | -- | -0.0867 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.81 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 175.90 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 4 | 176.07 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 7 | 176.49 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 8 | 176.74 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 11 | 177.00 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 14 | 177.15 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 16 | 177.27 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 19 | 177.67 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 29 | 178.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 31 | 178.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 32 | 178.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 35 | 178.20 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 43 | 178.41 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 45 | 178.42 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 52 | 178.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 54 | 178.55 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 57 | 178.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 61 | 178.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 65 | 178.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 75 | 178.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 97 | 179.07 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 103 | 179.10 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 132 | 179.34 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 144 | 179.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 151 | 179.55 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 153 | 179.56 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 158 | 179.59 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 173 | 179.67 | wind | 3 | 14400 | < th | dose independent | sin | 9 | NA |
| 177 | 179.68 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 188 | 179.77 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 219 | 179.94 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 260 | 180.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 273 | 180.30 | wind | 3 | 14400 | < th | dose dependent | sin | 9 | NA |
| 281 | 180.34 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 284 | 180.36 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 288 | 180.39 | wind | 3 | 14400 | > th | dose independent | sin | 9 | NA |
| 348 | 180.66 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 381 | 180.80 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 414 | 180.96 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 418 | 180.99 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 15 |
| 535 | 181.44 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 577 | 181.62 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 616 | 181.71 | humidity | 50 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 656 | 181.85 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 672 | 181.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 747 | 182.21 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 862 | 182.62 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 976 | 183.03 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |