BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0174000 Os01g0174000|Os01g0174000
(203 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0174000 Similar to Transcription factor HY5-like (HY5 ... 204 4e-53
Os02g0203000 Eukaryotic transcription factor, DNA-binding d... 120 5e-28
Os06g0601600 Basic-leucine zipper (bZIP) transcription fact... 89 2e-18
>Os01g0174000 Similar to Transcription factor HY5-like (HY5 homolog). Splice
isoform 2
Length = 203
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/172 (65%), Positives = 113/172 (65%)
Query: 32 APNNLKEGGGVESDEEIRRVPEMXXXXXXXXXXXXXDERXXXXXXXXXXXXXXXXXXXXX 91
APNNLKEGGGVESDEEIRRVPEM DER
Sbjct: 32 APNNLKEGGGVESDEEIRRVPEMGGGGGSASSGAGADERQGKEDGKQQGGGGGGAAAAGG 91
Query: 92 XXXXXPPARKRGRSAGDKEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAE 151
PPARKRGRSAGDKEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAE
Sbjct: 92 GQEQAPPARKRGRSAGDKEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAE 151
Query: 152 LEQRVSTLQNENNTLRQILKNTTAHAXXXXXXXXXXXXXXXXXXXXHHFTKS 203
LEQRVSTLQNENNTLRQILKNTTAHA HHFTKS
Sbjct: 152 LEQRVSTLQNENNTLRQILKNTTAHAGKRGGGGGGKGGDGGGGGKKHHFTKS 203
>Os02g0203000 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 360
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 41 GVESDEEIRRVPEMXXXXXXXXXXXXXDERXXXXXXXXXXXXXXXXXXXXXXXXXXPPAR 100
G+ESDEEI RVPE+ E AR
Sbjct: 116 GMESDEEIGRVPELGL------------EPGGASTSGRAAGGGGGGAERAQSSTAQASAR 163
Query: 101 KRGRSAGDKEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQ 160
+RGRS DKE RLKRLLRNRVSAQQARERKKAY+ +LE K KDLE +N+ELE+R STLQ
Sbjct: 164 RRGRSPADKEHKRLKRLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNSELEERFSTLQ 223
Query: 161 NENNTLRQILKNTTA 175
NEN LRQILKNTT
Sbjct: 224 NENQMLRQILKNTTV 238
>Os06g0601600 Basic-leucine zipper (bZIP) transcription factor domain containing
protein
Length = 85
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/56 (78%), Positives = 51/56 (91%)
Query: 116 RLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTLRQILK 171
RLLRNRVSAQQARERKKAYM+ELEA+ KDLE N+ELE+R+STLQNEN LRQ++K
Sbjct: 3 RLLRNRVSAQQARERKKAYMSELEARVKDLERSNSELEERLSTLQNENQMLRQVIK 58
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.124 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,382,522
Number of extensions: 83486
Number of successful extensions: 747
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 748
Number of HSP's successfully gapped: 3
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 153 (63.5 bits)