BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0174000 Os01g0174000|Os01g0174000
(203 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11260.1 | chr5:3593583-3594800 REVERSE LENGTH=169 115 2e-26
AT3G17609.2 | chr3:6023971-6024585 FORWARD LENGTH=150 89 2e-18
AT3G56660.1 | chr3:20986217-20988213 REVERSE LENGTH=621 52 2e-07
AT2G40950.1 | chr2:17087823-17090326 REVERSE LENGTH=722 52 3e-07
>AT5G11260.1 | chr5:3593583-3594800 REVERSE LENGTH=169
Length = 168
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 79/136 (58%), Gaps = 14/136 (10%)
Query: 41 GVESDEEIRRVPEMXXXXXXXXXXXXXDERXXXXXXXXXXXXXXXXXXXXXXXXXXPPAR 100
G+ESDEEIRRVPE R
Sbjct: 33 GIESDEEIRRVPEFGGEAVGKETSGRES--------------GSATGQERTQATVGESQR 78
Query: 101 KRGRSAGDKEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQ 160
KRGR+ +KE RLKRLLRNRVSAQQARERKKAY++ELE + KDLE +N+ELE+R+STLQ
Sbjct: 79 KRGRTPAEKENKRLKRLLRNRVSAQQARERKKAYLSELENRVKDLENKNSELEERLSTLQ 138
Query: 161 NENNTLRQILKNTTAH 176
NEN LR ILKNTT +
Sbjct: 139 NENQMLRHILKNTTGN 154
>AT3G17609.2 | chr3:6023971-6024585 FORWARD LENGTH=150
Length = 149
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 60/74 (81%)
Query: 100 RKRGRSAGDKEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTL 159
R+RGR+ DKE LKRLLRNRVSAQQARERKK Y+++LE++A +L+ N +LE+++STL
Sbjct: 68 RRRGRNPVDKEYRSLKRLLRNRVSAQQARERKKVYVSDLESRANELQNNNDQLEEKISTL 127
Query: 160 QNENNTLRQILKNT 173
NEN LR++L NT
Sbjct: 128 TNENTMLRKMLINT 141
>AT3G56660.1 | chr3:20986217-20988213 REVERSE LENGTH=621
Length = 620
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 108 DKEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTLR 167
D E+ + RL+RNR SA +R+RKK Y+ ELE K K++ +EL ++S EN TLR
Sbjct: 170 DDEKKKNVRLVRNRESAHLSRQRKKHYVEELEDKVKNMHSTISELSSKMSYFVAENVTLR 229
Query: 168 Q 168
Q
Sbjct: 230 Q 230
>AT2G40950.1 | chr2:17087823-17090326 REVERSE LENGTH=722
Length = 721
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 107 GDKEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTL 166
G++++ + RL+RNR SAQ +R+RKK Y+ ELE K +++ +L ++S EN TL
Sbjct: 225 GEEDEKKRARLMRNRESAQLSRQRKKHYVEELEEKVRNMHSTITDLNGKISYFMAENATL 284
Query: 167 RQIL 170
RQ L
Sbjct: 285 RQQL 288
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.124 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,169,747
Number of extensions: 55449
Number of successful extensions: 578
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 9
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 109 (46.6 bits)