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Os01g0169500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0178) R2 : 0.262
β1 : 0.733 (0.0654) R2dD : 0.211 R2D : 0.122
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.305 (0.0381) R2dN8 : 0.139 R2N8 : 0.0504
σ : 0.335
deviance : 51.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.64 0.228 10.3 1.45 0.6 -0.372 -0.0952 2.23 0.53 2.41 20.61 1658 -- --
26.59 0.24 10.3 1.14 0.652 -0.417 0.0812 -- 0.472 2.7 13.78 19769 -- --
23.65 0.226 10.3 1.46 0.601 -0.375 -- 2.24 0.528 2.4 21.03 1661 -- --
25.88 0.237 10.3 1.1 0.617 -0.514 -- -- 0.482 2.5 11.76 18868 -- --
32.4 0.267 10.3 1.2 -- -0.917 -- 1.87 0.526 -- 21.03 1661 -- --
29.65 0.255 10.3 0.705 0.608 -- -0.104 -- 0.29 2.53 -- -- -- --
29.69 0.255 10.3 0.707 0.608 -- -- -- 0.29 2.53 -- -- -- --
35.71 0.28 10.3 0.887 -- -0.806 -- -- 0.433 -- 21.03 1661 -- --
36.78 0.282 10.4 -- 0.605 0.397 -- -- 0.0928 2.56 0.1221 47520 -- --
51.38 0.335 10.3 0.733 -- -- -- -- 0.305 -- -- -- -- --
42.88 0.306 10.4 -- 0.621 -- -- -- 0.211 2.55 -- -- -- --
55.67 0.349 10.3 -- -- -0.628 -- -- 0.31 -- 21.03 1661 -- --
65.56 0.378 10.4 -- -- -- -- -- 0.224 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.52 atmosphere 1010 43200 < th dose dependent rect. 9 1
2 21.52 atmosphere 1010 43200 < th dose dependent rect. 9 3
4 21.53 atmosphere 1010 43200 < th dose dependent rect. 11 1
30 21.60 humidity 90 43200 < th dose independent rect. 19 1
77 21.70 atmosphere 1010 43200 < th dose dependent sin 2 NA
284 21.87 atmosphere 1010 43200 < th dose dependent no NA NA
313 21.88 atmosphere 1010 43200 < th dose dependent rect. 13 23
315 21.89 atmosphere 1005 43200 < th dose independent rect. 7 1
334 21.89 atmosphere 1010 43200 < th dose dependent rect. 11 23
382 21.94 atmosphere 1005 14400 > th dose dependent rect. 9 1
413 21.96 atmosphere 1005 14400 > th dose dependent rect. 9 3
424 21.97 atmosphere 1005 43200 > th dose independent rect. 5 10
426 21.97 atmosphere 1005 14400 > th dose dependent rect. 11 1
440 21.98 atmosphere 1005 43200 < th dose independent rect. 5 10
458 21.99 humidity 90 43200 > th dose independent rect. 20 1
463 21.99 atmosphere 995 43200 > th dose dependent rect. 9 1
477 22.00 atmosphere 1005 43200 > th dose independent rect. 9 5
499 22.01 atmosphere 1005 43200 > th dose independent rect. 12 1
565 22.03 atmosphere 1010 43200 < th dose dependent rect. 17 1
585 22.04 atmosphere 1005 43200 > th dose independent sin 2 NA
622 22.05 atmosphere 1005 43200 < th dose independent sin 2 NA
625 22.05 atmosphere 1005 43200 > th dose independent rect. 5 1
629 22.05 atmosphere 1005 43200 < th dose independent rect. 11 2
666 22.06 atmosphere 1010 14400 < th dose independent rect. 9 1
671 22.06 atmosphere 1005 43200 < th dose independent rect. 9 6
707 22.07 atmosphere 1005 43200 < th dose independent rect. 10 4
843 22.10 humidity 80 43200 > th dose independent rect. 17 1