BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0169500 Os01g0169500|AK120051
(1842 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G27670.1 | chr3:10245338-10253158 FORWARD LENGTH=1842 962 0.0
>AT3G27670.1 | chr3:10245338-10253158 FORWARD LENGTH=1842
Length = 1841
Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/1751 (35%), Positives = 941/1751 (53%), Gaps = 65/1751 (3%)
Query: 118 FVKAVAALVSCALRSGSAASRF-PPHDHPFVQALASGADGXXXXXXXXXXXXXXE---GV 173
FVK + L+ + +F +HPFV+ +S + G+
Sbjct: 100 FVKGLGFLIRIGYERNNGNWKFNSTENHPFVRIQSSRVETQTELLHQVSLFVMHNRRLGM 159
Query: 174 HGVVGFLRPFVMFAAVR-----KGDTAFVKDLIGXXXXXXXXXXRPDSAVPVLKLLAECL 228
GV FL PF+ F +R + F ++LI A+P+ +LL CL
Sbjct: 160 VGVCEFLEPFLNFTILRIPLSDSSSSLFARELISSMASLCCSSRH--EALPIFRLLMRCL 217
Query: 229 LHFGRGDGEEVRLWLSSVECLVDAYVVLLRKFAHAQMATYDAQANSVELIEMLLSQC-SL 287
+ + E + V+ LVDAY V++R + + V+L++ +L C S
Sbjct: 218 KYIPGNNLEVI------VKILVDAYTVVVRDLVGTGLEVTEVHLLGVQLVDGVLFLCASP 271
Query: 288 HHQFMGNTSVVLGLSKHLFLAQKDLGLCYLPEISVVLSSLAFILSGLEFEHEQLSGLKLL 347
H Q SV+ L KHL QKDLGL Y ++S+V+ SL F+L+ EHEQL LK L
Sbjct: 272 HVQTTEQESVIESL-KHLLAVQKDLGLAYSHDLSLVVLSLVFMLAKSTVEHEQLCILKFL 330
Query: 348 AFLIEWRHENALRTNEAVHHFSEEIVCVLPVINLVISPSKSVKSVASHVLSRFHVLVLDL 407
FL++W+ E+ + + S E + + P+ L+ SPSKS+K AS VLS ++ +
Sbjct: 331 LFLLKWKTESENLSVKDAAGSSVESLLLFPITALMSSPSKSIKVAASKVLSIVENFLVTV 390
Query: 408 LASCSSEQQDSSMVHHISKPTSILPKLVHHLWSQS----SSSGFIFTKYITSRGLAESAG 463
+ E S +S+ S++ + + LW Q+ S+S F+ Y +E
Sbjct: 391 SNAPKIEVHTSKGDSPLSRVGSVVFRFMQQLWHQNDYTPSTSSFLRVAYTNG---SEKQE 447
Query: 464 NSTEPNYWTHQINEYLSAXXXXXXXXXXXXXXXIQXXXXXXXXXXXXXXXXMHPKIGTSA 523
P W N L MHP +G A
Sbjct: 448 TYLGPVTW----NSLLREHAERFWDKKKLSASFCLSQEIPILLGAVAGVMVMHPSLGADA 503
Query: 524 AQSLALLGATDPKLGMPLLVLILFYTKVLYSNNNCDANIXXXXXXXXXXXAVHGFVLPLS 583
SL ++G D K+ +PLL+ +L+++ +L N ++ A ++PL
Sbjct: 504 IGSLTIIGGIDSKMSVPLLLAVLYFSNLLSRTNVPCQSLLSKLLGLLPSLAAQQVMIPLV 563
Query: 584 LQLISSMLKKDVKSVLYPIAVRLLCKMWTVTDWAFQNLQGTLDPENFSNSVDDREVFTSI 643
+Q I+ ML+KD K +LY A+RLLC+ W V D AF +LQ L P+ F + +R + S+
Sbjct: 564 VQTITPMLRKDAKGLLYATAIRLLCQTWVVNDRAFSSLQEVLRPQGFIEYISERHICISM 623
Query: 644 AASVRDVCKQNPDRGVDLILSVSACIESRDSVVQALGLESLSYLCEEDVVDFYTAWKVIS 703
AAS+ DVCK++PDRGVDLILSV ACIES++ V+ALG +SLS+LCE DV+DFYTAW VI
Sbjct: 624 AASIHDVCKRHPDRGVDLILSVQACIESQNCPVRALGFQSLSHLCEADVIDFYTAWDVIK 683
Query: 704 KQLLDFSIDPTVSHGLCILLRWGAMDSEAYPGTSKHLIQILWSIGTYREKNVDPLWVKAR 763
K +DP +++ +C LL+WGAMD+EAYP +++++ ILW IG+ +K D W KAR
Sbjct: 684 KHAQHIKLDPLLAYSVCHLLKWGAMDAEAYPEDAENVLNILWEIGSSMQKPHDSQWTKAR 743
Query: 764 GTAFQSLSHYKISLIKDAIPDFWRINYECFTTERNLEVLKAMDNFQAEIINFEHINRRRL 823
+A +L Y++S +++ DF + +E N E+L A+++ +I+ EH RRR
Sbjct: 744 VSAIVALGQYEVSFMENKFSDFNKNCTYLLFSETNAEILNALEDLSIKIMIHEHSVRRRY 803
Query: 824 TTDKITTVHKFEKLLDAFPQAVF-KGKSAH-HRFPGAALLTLNFTPKDILHEGKSKDLPR 881
+K K EKLLD PQ +F GK PGAALL L++ P+D+ G S+
Sbjct: 804 VREKKVPGSKIEKLLDVIPQVIFPAGKEIKTGELPGAALLCLSYNPRDVKF-GSSRSFHD 862
Query: 882 VHAAYEQALVEMAESMYISRNMVVALLALHSWKSFVSNWMQAVIACLD--TKESSKLNKA 939
VH YE+A + +S+ +SRN+ +AL++L S K+F+ WM+A I +D TKE S +K
Sbjct: 863 VHFQYEEAFRVVVKSLQLSRNISLALISLQSLKAFMRRWMRANILSIDATTKELSS-DKT 921
Query: 940 SKAADDIFKILCKCXXXXXXXXXXXIALAIGALCLVVPPTAHLVISSASDFLLRWLFQYE 999
SKA ++I K L IALA+GALC +P +H + +SAS FLL WL ++E
Sbjct: 922 SKATNNIMKSLVHMAEEALPRCAENIALALGALCAALPAASHNIKASASKFLLSWLLEHE 981
Query: 1000 HEHQQWSTALSLGLISNCFHPTDKRSKLQVINGLLEVISKTESYLVKGACGLGLGYCCQA 1059
HEH+QW+ +SLGLIS+ H TD + K Q I+GLLEV+ ++S LVKGACG+GLG+ CQ
Sbjct: 982 HEHRQWTAGISLGLISSSLHVTDHKQKFQNISGLLEVLCSSKSTLVKGACGVGLGFSCQD 1041
Query: 1060 LLARADNAADSELEATT-QLTERASVEEILHTLTTSLVQLCPFSCYSLKKLS-------- 1110
LL R + +A S++++ + + E + I+ L++ L C L+ LS
Sbjct: 1042 LLTRTEASASSDIDSDSYRNQEERLLGRIVRLLSSILHGFLHTPCDILESLSALFPPGEE 1101
Query: 1111 --ICGIKSLEGMEEKYVSLEDDPWXXXXXXXXXXXXXXXXYRLGAYEAIIEVKNILISWI 1168
+ G+ L ++E +DD W YR G +A++++KN+++SWI
Sbjct: 1102 DNVIGLPQL--LDESSDDFDDDTWGIAGLIIGLGMSVGAIYRAGKKDAVVKIKNLIVSWI 1159
Query: 1169 P---DVXXXXXXXXXXXXXXXCMGSCLALPSVLAFCQKVELLN-DDLDALFNRYTSLATN 1224
P + +GSCLALP V+ FCQKVEL + ++D + + L +
Sbjct: 1160 PYADSLKQTSGSNSKVSVRLFSVGSCLALPIVITFCQKVELFDAHEVDDIIGCFKDLISE 1219
Query: 1225 LLSLKKSGTIFQNLLMAICIGAGSFLSSILNDGVHAMKFTDVKDLLDTLKHIYTHPYPPL 1284
LL ++KSG + + LLMA CIGAG L S+LN+G+H +K VK+LL+ K Y+ YPP+
Sbjct: 1220 LLIVRKSGALRKRLLMASCIGAGDLLGSVLNEGIHPVKIESVKELLELFKKCYSGLYPPV 1279
Query: 1285 VHLGGMLGTVNAFGAGAGDLTGICRQPTNSQI-KHEKESSLVRGPVLTSSVGETLSTSMI 1343
H GGMLG VN GAGAG+L +P E E S V GP+L+++ T ++
Sbjct: 1280 AHFGGMLGVVNVLGAGAGNLVYSHPRPRAPPASSEENEISYVSGPLLSNAYFTQQLTPVV 1339
Query: 1344 QEIFLLAKDAEDDHIKDYAAWAISFLRSRWLSKNQIIFXXXXXXXXXXXXXXXXXXXXXX 1403
QEIFL+A++ +D ++ YAAWAIS LR+ S
Sbjct: 1340 QEIFLIAQNTKDRQLQHYAAWAISILRTYMRSGESSSLSNENQSDDSDRNSISHNVPEHT 1399
Query: 1404 LVWNLSQWLRDLNFEKPDSMVSTSTVATVLRCLSKAPRLPSIDWGVIVRRCMNVEAHIPD 1463
+V L+Q L + +F S ++ T+A+ LRCLS APRLP++DWG +RR M E D
Sbjct: 1400 MVMKLAQGLTNPSFPLAGSPLNIGTMASALRCLSHAPRLPNLDWGATIRRLMKQETQT-D 1458
Query: 1464 MLTNHHDPK--LLREECLYISLAHASHISPLLHFIDDLTDLSRFRRLEINLQSILLQYLS 1521
+ + PK LREEC SLAHAS LL F+D+L++LSRF+ LE +LQS LL +L
Sbjct: 1459 VTQSGDVPKEITLREECFKFSLAHASEFDELLAFLDELSELSRFKALEESLQSCLLCHLG 1518
Query: 1522 TLMKLFSLSRLDKLSEDLTEYLYSPTSSYLDYSSEQRSMLRTSFWKGIRECLVEDVSEES 1581
LM++FS SR++KL +D++ ++ S SS YS +Q+S LR S WKG+ +CL E E S
Sbjct: 1519 GLMRIFSGSRMNKLFDDVSCFVVS-LSSDQTYSCDQKSSLRVSCWKGLSQCLEETSLESS 1577
Query: 1582 SGFSCIKKCIQSLSPLLSLH----KDGQPEFIEEWSAAIKCLTVAQKGLLGDMLQVEISS 1637
+ I+KCI+ L +L + + Q ++EWS A+ CL + + L LQV
Sbjct: 1578 EYVTKIEKCIELLFAVLPVASQSPRADQMGSVKEWSEAVTCLQKSHRDWLYKFLQVSNLE 1637
Query: 1638 SFNELEHIDVA-KKIIIRARMCSSGCGSVDELGNIKTTILSTRLDGVWWNVLVEVAGALY 1696
NE + KKI +A++ G ELG +K IL+ + W+VL+E+ AL+
Sbjct: 1638 PGNEKTNFQGDLKKIQAKAKLAKLGSVPFSELGKLKAIILNCEESDI-WDVLIEIVAALH 1696
Query: 1697 YADSRMKKQWLLDALDIGCVTAHPSTVLHFVGLLCGSCCIYMPLLIVNPTNVLSDLPVTL 1756
+A+ +K+QWL+DA++I CV++HPST + FVGLL CC YMP L ++ + VLSD+ VT+
Sbjct: 1697 HAEGGIKRQWLIDAVEISCVSSHPSTAIIFVGLLSSICCEYMPFLNLDRSTVLSDMSVTV 1756
Query: 1757 PSFLSSSIWDDLRNSVADKLWLLTARIYTWAEQLTHSVGLARHDHIHGSEAEMAIFLANI 1816
S LS ++ + LW R+Y++A + + L+ I SE + A L +
Sbjct: 1757 TSLLSDPSYEVVTEPFISFLWTSLERVYSFATESDANARLSSQ-QIAQSERDKAPMLVKV 1815
Query: 1817 LRCTCIAVEDH 1827
+ C+A DH
Sbjct: 1816 MHYICVAFRDH 1826
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 34,193,080
Number of extensions: 1306485
Number of successful extensions: 3157
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3141
Number of HSP's successfully gapped: 2
Length of query: 1842
Length of database: 11,106,569
Length adjustment: 113
Effective length of query: 1729
Effective length of database: 8,008,561
Effective search space: 13846801969
Effective search space used: 13846801969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 119 (50.4 bits)