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Os01g0168100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : t-snare domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0244) R2 : 0.602
β1 : -0.999 (0.0935) R2dD : 0.117 R2D : 0.0387
β2 : 1.17 (0.0619) R2dC : 0.33 R2C : 0.402
β3 : -1.7 (0.142) R2dE : 0.155 R2E : 0.154
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0149 (0.0538) R2dN8 : -0.000151 R2N8 : 0.00027
σ : 0.449
deviance : 92.8
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_____
C
peak time of C : 8.07
E
wheather : radiation
threshold : 0.5761
memory length : 1504
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.88 0.44 12.5 -0.881 1.22 -2.12 1.04 -2.03 0.0232 8.48 0.3877 1466 -- --
89.21 0.44 12.5 -1.06 1.22 -1.66 1.11 -- 0.0182 8.24 0.4896 1492 -- --
90.02 0.442 12.5 -0.865 1.18 -2.37 -- -2.47 0.023 7.86 0.2371 1504 -- --
92.8 0.449 12.5 -0.999 1.17 -1.7 -- -- 0.0149 8.07 0.5761 1504 -- --
156.3 0.585 12.5 -0.64 -- -0.745 -- -0.249 0.184 -- 0.2371 1504 -- --
116.49 0.506 12.4 -0.648 1.31 -- 1.04 -- 0.189 8.7 -- -- -- --
120.06 0.513 12.4 -0.615 1.31 -- -- -- 0.189 8.69 -- -- -- --
156.7 0.586 12.5 -0.647 -- -0.747 -- -- 0.182 -- 0.2371 1504 -- --
113.82 0.497 12.5 -- 1.19 -1.23 -- -- 0.121 8.24 2.119 1507 -- --
217.37 0.689 12.5 -0.612 -- -- -- -- 0.2 -- -- -- -- --
130.02 0.533 12.4 -- 1.31 -- -- -- 0.257 8.72 -- -- -- --
167.72 0.605 12.5 -- -- -0.74 -- -- 0.254 -- 0.2371 1504 -- --
227.24 0.704 12.5 -- -- -- -- -- 0.268 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.57 humidity 90 720 < th dose dependent rect. 19 2
2 85.93 humidity 90 720 < th dose dependent rect. 18 4
8 87.73 humidity 50 720 > th dose dependent rect. 16 10
9 87.79 radiation 1 1440 < th dose dependent rect. 11 19
10 87.81 radiation 1 1440 < th dose independent rect. 11 19
11 87.84 radiation 1 1440 > th dose independent rect. 11 19
20 88.09 humidity 70 720 > th dose independent rect. 15 12
24 88.23 humidity 70 720 > th dose independent rect. 16 10
41 88.57 radiation 1 1440 < th dose dependent rect. 11 8
47 88.60 radiation 1 1440 < th dose dependent rect. 11 14
86 88.99 radiation 1 1440 < th dose dependent sin 17 NA
104 89.09 temperature 25 1440 > th dose dependent rect. 15 2
111 89.12 radiation 1 1440 < th dose dependent rect. 18 23
122 89.19 radiation 1 720 < th dose dependent rect. 5 14
126 89.33 radiation 30 14400 < th dose independent rect. 16 13
128 89.35 radiation 30 14400 < th dose independent rect. 16 2
131 89.36 radiation 30 14400 < th dose independent rect. 16 5
150 89.44 radiation 1 1440 > th dose independent rect. 11 8
164 89.46 radiation 1 1440 < th dose independent rect. 11 8
172 89.49 radiation 1 1440 < th dose independent rect. 11 14
178 89.53 radiation 1 1440 < th dose dependent rect. 5 23
181 89.55 radiation 1 1440 > th dose independent sin 16 NA
182 89.55 humidity 70 720 > th dose independent rect. 15 5
202 89.57 radiation 1 1440 < th dose dependent rect. 5 20
207 89.59 radiation 30 14400 < th dose independent rect. 16 9
214 89.61 radiation 1 1440 < th dose independent sin 16 NA
249 89.70 radiation 40 14400 > th dose dependent rect. 15 17
259 89.75 radiation 1 1440 < th dose dependent rect. 24 21
260 89.76 radiation 1 1440 < th dose dependent rect. 24 19
271 89.78 radiation 1 1440 < th dose dependent rect. 2 17
281 89.80 radiation 1 1440 < th dose dependent no NA NA
284 89.80 radiation 1 1440 < th dose dependent rect. 2 23
294 89.82 humidity 80 1440 < th dose independent rect. 7 14
322 89.87 humidity 80 1440 < th dose independent rect. 7 9
423 90.17 humidity 60 720 > th dose dependent rect. 18 1
437 90.27 humidity 50 1440 > th dose dependent rect. 11 12
446 90.31 temperature 25 720 > th dose dependent rect. 19 2
450 90.32 humidity 80 720 < th dose independent rect. 19 2
455 90.33 humidity 70 720 > th dose independent rect. 15 18
459 90.34 humidity 80 1440 < th dose independent sin 1 NA
461 90.34 humidity 80 1440 > th dose independent rect. 7 14
473 90.38 humidity 60 720 > th dose dependent rect. 16 5
488 90.49 temperature 25 720 > th dose dependent rect. 18 4
499 90.53 humidity 90 1440 < th dose dependent rect. 11 11
502 90.54 wind 5 43200 > th dose dependent rect. 13 1
510 90.56 humidity 70 720 > th dose dependent rect. 18 3
630 90.87 humidity 80 1440 > th dose independent sin 0 NA
645 90.90 humidity 50 1440 > th dose dependent sin 19 NA
649 90.92 humidity 70 720 > th dose independent sin 13 NA
676 90.99 humidity 80 1440 > th dose independent rect. 7 9
726 91.10 humidity 80 1440 < th dose dependent rect. 15 18
734 91.12 radiation 40 14400 > th dose dependent rect. 15 1
758 91.14 temperature 25 1440 > th dose dependent sin 19 NA
780 91.16 temperature 25 1440 > th dose dependent rect. 13 19
821 91.23 humidity 90 1440 < th dose dependent sin 19 NA
860 91.29 wind 5 43200 > th dose dependent rect. 11 5
864 91.30 wind 5 43200 > th dose independent rect. 11 3
894 91.34 humidity 90 1440 < th dose dependent rect. 7 16
897 91.34 humidity 90 1440 < th dose dependent rect. 5 17
927 91.40 radiation 30 14400 > th dose independent rect. 16 1
986 91.48 wind 5 43200 < th dose independent rect. 11 3
988 91.48 humidity 70 14400 < th dose independent rect. 19 13
994 91.49 wind 7 43200 < th dose independent rect. 11 10
996 91.49 humidity 80 1440 < th dose dependent sin 15 NA