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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0167900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : KIP1-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.4 (0.0606) R2 : 0.331
β1 : 0.0271 (0.251) R2dD : 0.00011 R2D : -0.112
β2 : 0.683 (0.115) R2dC : 0.0519 R2C : -0.0473
β3 : 2.64 (0.36) R2dE : 0.393 R2E : -0.492
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.84 (0.894) R2dD*E : 0.741 R2D*E : -0.102
γ1 : 0.216 (0.106) R2dN8 : 0.0101 R2N8 : -0.11
σ : 0.843
deviance : 327.44
__
_____
C
peak time of C : 4.05
E
wheather : radiation
threshold : 10.29
memory length : 4270
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17
open length of G : 13.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.49 0.846 5.41 0.0383 0.672 2.57 -1.21 9.64 0.196 3.56 10.16 4285 17 13
375.56 0.903 4.94 0.758 0.452 2.11 -1.04 -- 0.5 2.81 -3.517 37303 17.5 10.9
327.44 0.843 5.4 0.0271 0.683 2.64 -- 9.84 0.216 4.05 10.29 4270 17 13.1
358.22 0.882 4.89 0.732 0.728 2 -- -- 0.584 4.38 -0.009206 47520 18.5 10.2
352.51 0.874 5.4 0.151 -- 2.68 -- 9.99 0.216 -- 10.16 4306 17 13.1
417.31 0.958 4.94 -0.648 0.773 -- -0.998 -- 0.484 3.77 -- -- -- --
420.04 0.96 4.94 -0.633 0.776 -- -- -- 0.49 4.08 -- -- -- --
387.66 0.917 4.91 0.706 -- 2.02 -- -- 0.568 -- -0.2909 47520 18.5 10.2
351.01 0.873 4.93 -- 0.73 1.55 -- -- 0.42 4.39 -10.2 47520 18.5 9.83
452.79 0.994 4.94 -0.602 -- -- -- -- 0.51 -- -- -- -- --
430.61 0.971 4.92 -- 0.764 -- -- -- 0.56 4.09 -- -- -- --
379.02 0.907 4.97 -- -- 1.53 -- -- 0.38 -- -10.83 47520 18.5 9.52
462.34 1 4.93 -- -- -- -- -- 0.577 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 326.34 radiation 10 4320 < th dose independent rect. 17 13
3 327.78 radiation 10 4320 > th dose dependent rect. 17 13
4 328.52 radiation 10 4320 < th dose independent rect. 17 10
8 329.44 radiation 10 4320 < th dose independent rect. 17 3
15 330.12 radiation 20 4320 < th dose independent rect. 17 15
18 331.07 radiation 20 4320 < th dose independent rect. 22 10
21 331.14 radiation 20 4320 < th dose independent rect. 1 7
25 331.26 radiation 20 4320 < th dose independent rect. 4 4
29 331.50 radiation 10 4320 > th dose dependent rect. 17 1
44 334.78 humidity 90 14400 > th dose independent rect. 1 2
45 334.89 humidity 90 14400 < th dose independent rect. 21 7
48 335.38 temperature 15 43200 > th dose independent rect. 5 1
50 335.81 humidity 90 14400 < th dose independent rect. 21 10
53 335.92 radiation 40 4320 < th dose independent rect. 15 18
54 335.98 humidity 80 43200 > th dose dependent rect. 9 1
57 336.05 radiation 30 14400 < th dose independent rect. 16 13
58 336.17 humidity 90 14400 > th dose independent rect. 24 8
59 336.19 humidity 50 43200 < th dose independent rect. 7 3
62 336.28 radiation 20 4320 < th dose dependent rect. 18 11
67 336.46 humidity 90 14400 < th dose independent rect. 1 1
79 336.57 wind 3 43200 > th dose independent rect. 10 3
85 336.80 wind 7 43200 > th dose independent rect. 10 1
92 336.95 humidity 90 14400 < th dose independent rect. 24 8
96 337.01 radiation 1 14400 < th dose independent rect. 5 4
103 337.12 radiation 1 14400 > th dose independent rect. 5 4
111 337.34 wind 7 43200 < th dose independent rect. 10 1
112 337.34 humidity 50 43200 > th dose independent rect. 7 3
115 337.38 wind 1 43200 > th dose dependent rect. 9 3
119 337.40 wind 9 43200 < th dose dependent rect. 9 3
123 337.53 radiation 1 14400 < th dose independent rect. 24 9
143 337.74 radiation 1 14400 < th dose independent rect. 18 18
156 337.84 radiation 30 14400 < th dose independent rect. 16 4
159 337.89 humidity 90 43200 < th dose independent rect. 8 2
162 337.90 humidity 90 14400 > th dose independent rect. 21 10
166 337.95 wind 3 43200 < th dose independent rect. 10 3
167 337.95 radiation 10 4320 < th dose dependent rect. 22 7
169 337.96 humidity 90 14400 > th dose independent rect. 22 5
170 337.96 radiation 1 14400 < th dose independent rect. 5 7
175 338.04 radiation 30 14400 < th dose independent rect. 16 2
176 338.05 radiation 1 14400 > th dose independent rect. 5 7
181 338.11 humidity 50 43200 > th dose independent rect. 5 5
189 338.19 humidity 90 43200 > th dose independent rect. 8 2
203 338.32 wind 3 43200 > th dose dependent rect. 4 11
208 338.37 radiation 1 14400 < th dose independent rect. 24 12
219 338.40 wind 9 43200 < th dose dependent rect. 4 10
220 338.41 wind 9 14400 < th dose independent rect. 16 1
242 338.47 radiation 1 14400 < th dose dependent rect. 18 18
254 338.51 humidity 50 43200 < th dose independent rect. 21 13
263 338.53 radiation 1 14400 < th dose independent sin 9 NA
359 338.82 radiation 1 14400 < th dose dependent rect. 23 10
360 338.83 radiation 1 14400 < th dose dependent rect. 5 4
372 338.87 radiation 1 14400 < th dose dependent rect. 2 7
386 338.92 radiation 1 14400 < th dose dependent rect. 23 13
387 338.93 humidity 90 43200 < th dose independent rect. 8 4
407 338.95 humidity 90 43200 > th dose independent rect. 8 4
411 338.96 radiation 1 14400 < th dose dependent rect. 2 10
413 338.97 radiation 1 14400 < th dose dependent rect. 4 8
429 339.01 wind 5 43200 > th dose dependent rect. 9 3
440 339.07 radiation 1 14400 > th dose independent sin 8 NA
454 339.12 wind 3 43200 > th dose dependent sin 3 NA
495 339.27 humidity 90 14400 < th dose independent sin 10 NA
520 339.38 radiation 10 4320 > th dose dependent rect. 17 15
521 339.39 wind 7 43200 < th dose independent rect. 8 4
524 339.40 wind 7 43200 > th dose independent rect. 8 4
555 339.50 humidity 60 43200 < th dose dependent rect. 7 2
573 339.62 humidity 50 43200 > th dose independent rect. 21 13
579 339.66 radiation 1 14400 < th dose dependent sin 8 NA
588 339.72 temperature 15 43200 < th dose independent rect. 4 1
594 339.75 atmosphere 1010 4320 > th dose independent rect. 11 1
603 339.79 radiation 1 4320 > th dose dependent rect. 4 2
619 339.82 humidity 50 43200 > th dose independent rect. 18 16
647 339.91 atmosphere 1010 4320 < th dose independent rect. 11 1
648 339.91 wind 5 43200 < th dose independent rect. 3 13
649 339.91 radiation 30 14400 > th dose independent rect. 16 16
663 339.97 wind 7 43200 < th dose independent rect. 5 7
664 339.97 wind 5 43200 > th dose independent rect. 3 13
692 340.03 humidity 90 43200 < th dose independent rect. 5 7
743 340.19 wind 7 43200 < th dose independent rect. 4 9
751 340.22 wind 5 43200 < th dose independent sin 3 NA
769 340.27 wind 7 43200 > th dose independent rect. 5 7
791 340.39 wind 5 43200 > th dose independent sin 3 NA
795 340.39 temperature 20 1440 > th dose dependent rect. 6 6
822 340.50 wind 9 43200 < th dose dependent sin 3 NA
840 340.58 humidity 60 43200 > th dose independent rect. 15 8
851 340.61 atmosphere 1010 4320 < th dose independent rect. 9 4
880 340.67 wind 7 43200 < th dose independent rect. 24 13
909 340.76 wind 7 43200 > th dose independent rect. 24 13
980 340.96 wind 7 43200 < th dose independent sin 5 NA
998 340.99 temperature 15 4320 > th dose dependent rect. 9 1