Os01g0166800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0166800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.17 | 0.542 | 8.53 | -0.218 | 0.537 | 1.16 | -1.95 | -1.04 | -0.116 | 18.7 | 30 | 10 | -- | -- |
| 134.56 | 0.544 | 8.53 | -0.201 | 0.566 | 1 | -2.38 | -- | -0.12 | 20 | 30 | 10 | -- | -- |
| 141.74 | 0.559 | 8.53 | -0.175 | 0.551 | 1.06 | -- | -1.46 | -0.123 | 19.6 | 30 | 10 | -- | -- |
| 151.16 | 0.573 | 8.53 | -0.148 | 0.529 | 1.12 | -- | -- | -0.12 | 18.8 | 28.39 | 9 | -- | -- |
| 155.32 | 0.584 | 8.52 | -0.176 | -- | 1.19 | -- | -1.43 | -0.133 | -- | 26.65 | 9 | -- | -- |
| 163.74 | 0.6 | 8.56 | -0.252 | 1.22 | -- | -1.67 | -- | -0.134 | 22.1 | -- | -- | -- | -- |
| 174.39 | 0.618 | 8.55 | -0.19 | 1.23 | -- | -- | -- | -0.132 | 22.4 | -- | -- | -- | -- |
| 164.81 | 0.601 | 8.52 | -0.138 | -- | 1.16 | -- | -- | -0.132 | -- | 25.45 | 9 | -- | -- |
| 151.64 | 0.577 | 8.53 | -- | 0.539 | 1.06 | -- | -- | -0.107 | 19.3 | 28.39 | 9 | -- | -- |
| 266.24 | 0.762 | 8.52 | -0.169 | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
| 175.34 | 0.619 | 8.55 | -- | 1.22 | -- | -- | -- | -0.111 | 22.4 | -- | -- | -- | -- |
| 165.31 | 0.601 | 8.52 | -- | -- | 1.16 | -- | -- | -0.116 | -- | 25.45 | 9 | -- | -- |
| 267 | 0.763 | 8.52 | -- | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.10 | radiation | 40 | 10 | < th | dose dependent | sin | 5 | NA |
| 3 | 131.47 | radiation | 1 | 10 | > th | dose dependent | sin | 5 | NA |
| 5 | 131.81 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 6 | 131.99 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 13 | 132.41 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 14 | 132.44 | radiation | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 15 | 132.98 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 23 |
| 18 | 133.20 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 19 | 133.21 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 33 | 133.45 | radiation | 30 | 10 | < th | dose dependent | no | NA | NA |
| 36 | 133.55 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 52 | 133.75 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 65 | 133.88 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 124 | 134.28 | radiation | 1 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 164 | 135.16 | radiation | 10 | 10 | > th | dose independent | rect. | 15 | 23 |
| 168 | 135.33 | radiation | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 174 | 135.61 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 175 | 135.61 | radiation | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 198 | 136.03 | radiation | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 203 | 136.14 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 206 | 136.25 | radiation | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 209 | 136.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 18 |
| 223 | 136.55 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 224 | 136.61 | radiation | 1 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 242 | 136.75 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 243 | 136.76 | radiation | 30 | 10 | < th | dose independent | sin | 7 | NA |
| 338 | 137.06 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 11 |
| 366 | 137.17 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 486 | 137.54 | humidity | 70 | 720 | > th | dose independent | rect. | 3 | 9 |
| 505 | 137.70 | radiation | 10 | 10 | > th | dose independent | sin | 1 | NA |
| 508 | 137.73 | radiation | 10 | 10 | > th | dose independent | rect. | 17 | 23 |
| 528 | 138.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 530 | 138.12 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 18 |
| 665 | 138.48 | radiation | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 666 | 138.49 | humidity | 60 | 90 | > th | dose independent | rect. | 4 | 14 |
| 671 | 138.52 | humidity | 50 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 737 | 138.97 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 16 |
| 801 | 139.27 | radiation | 10 | 10 | > th | dose independent | rect. | 13 | 23 |
| 823 | 139.50 | radiation | 10 | 10 | < th | dose independent | rect. | 21 | 23 |
| 836 | 139.60 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 878 | 139.80 | humidity | 80 | 90 | < th | dose dependent | sin | 7 | NA |
| 887 | 139.92 | humidity | 50 | 10 | > th | dose dependent | sin | 1 | NA |
| 905 | 140.04 | radiation | 10 | 10 | < th | dose independent | rect. | 13 | 21 |
| 908 | 140.06 | humidity | 90 | 10 | < th | dose dependent | sin | 2 | NA |
| 911 | 140.08 | humidity | 70 | 10 | < th | dose dependent | sin | 6 | NA |