BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0166800 Os01g0166800|AK073783
         (597 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0166800  Conserved hypothetical protein                     1130   0.0  
AK110108                                                          102   7e-22

>Os01g0166800 Conserved hypothetical protein
          Length = 597

 Score = 1130 bits (2924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/597 (92%), Positives = 552/597 (92%)

Query: 1   MVGPQYDLVGNPLGAVRSTFERAAAESGGHEPVAAFRGKDWGATEVFRSFLFEQGGLDKV 60
           MVGPQYDLVGNPLGAVRSTFERAAAESGGHEPVAAFRGKDWGATEVFRSFLFEQGGLDKV
Sbjct: 1   MVGPQYDLVGNPLGAVRSTFERAAAESGGHEPVAAFRGKDWGATEVFRSFLFEQGGLDKV 60

Query: 61  PVLDESNLGLIKPNTLVRFRGMVQDMLGNEFYVGAFKDGSTWRTNKFSDSSPFSMPHPCD 120
           PVLDESNLGLIKPNTLVRFRGMVQDMLGNEFYVGAFKDGSTWRTNKFSDSSPFSMPHPCD
Sbjct: 61  PVLDESNLGLIKPNTLVRFRGMVQDMLGNEFYVGAFKDGSTWRTNKFSDSSPFSMPHPCD 120

Query: 121 SHLWERHLFHCVPVPGQNSWTRESSPGPDLRRIASCFTSEQREKRKRGADNDAMXXXXXX 180
           SHLWERHLFHCVPVPGQNSWTRESSPGPDLRRIASCFTSEQREKRKRGADNDAM      
Sbjct: 121 SHLWERHLFHCVPVPGQNSWTRESSPGPDLRRIASCFTSEQREKRKRGADNDAMDVSESG 180

Query: 181 XXXXXXXXXXXXXXXXXIXXXXXXXXXXXXHHVPEMNGGDHHIPGSSFSCLVKVYDMPES 240
                            I            HHVPEMNGGDHHIPGSSFSCLVKVYDMPES
Sbjct: 181 SGETSSSSKKTKDDGVKISNSSVEMSMNEEHHVPEMNGGDHHIPGSSFSCLVKVYDMPES 240

Query: 241 QVKLNDVSEFIGVYTFDPELAAPNDNSDDIMFDLMEDVTAQLPPSKVPRLHCLVWRNLSA 300
           QVKLNDVSEFIGVYTFDPELAAPNDNSDDIMFDLMEDVTAQLPPSKVPRLHCLVWRNLSA
Sbjct: 241 QVKLNDVSEFIGVYTFDPELAAPNDNSDDIMFDLMEDVTAQLPPSKVPRLHCLVWRNLSA 300

Query: 301 HDFLPRPPAVEPSPILLRGIRQSLLSHLTLVLGKDELAAQCXXXXXXXXXXNKVDVVTVG 360
           HDFLPRPPAVEPSPILLRGIRQSLLSHLTLVLGKDELAAQC          NKVDVVTVG
Sbjct: 301 HDFLPRPPAVEPSPILLRGIRQSLLSHLTLVLGKDELAAQCLLLHLLSRLRNKVDVVTVG 360

Query: 361 RLSLNFTGFNRESVSIFGNQLNNLFQRLLPYSQVIPLSIEYLNTATLQPRKDNQSGRLVT 420
           RLSLNFTGFNRESVSIFGNQLNNLFQRLLPYSQVIPLSIEYLNTATLQPRKDNQSGRLVT
Sbjct: 361 RLSLNFTGFNRESVSIFGNQLNNLFQRLLPYSQVIPLSIEYLNTATLQPRKDNQSGRLVT 420

Query: 421 GVLQLPQGTHLTFDETLLQSGSLTSKGVENTMLLKNLMESQKVEYDFEFYKLEMATDVQL 480
           GVLQLPQGTHLTFDETLLQSGSLTSKGVENTMLLKNLMESQKVEYDFEFYKLEMATDVQL
Sbjct: 421 GVLQLPQGTHLTFDETLLQSGSLTSKGVENTMLLKNLMESQKVEYDFEFYKLEMATDVQL 480

Query: 481 LILSEGKSNILPSDLIVPFRPSSVPAVNASSEELESWRWYLATVRSLPQSTETDTYQMIQ 540
           LILSEGKSNILPSDLIVPFRPSSVPAVNASSEELESWRWYLATVRSLPQSTETDTYQMIQ
Sbjct: 481 LILSEGKSNILPSDLIVPFRPSSVPAVNASSEELESWRWYLATVRSLPQSTETDTYQMIQ 540

Query: 541 DEMVNAMRDDRSLGCSELSRWLTMAQIMAASFGEKSLSMEHWQMVKELERLRKERLQ 597
           DEMVNAMRDDRSLGCSELSRWLTMAQIMAASFGEKSLSMEHWQMVKELERLRKERLQ
Sbjct: 541 DEMVNAMRDDRSLGCSELSRWLTMAQIMAASFGEKSLSMEHWQMVKELERLRKERLQ 597



>AK110108 
          Length = 1007

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 139/309 (44%), Gaps = 36/309 (11%)

Query: 321 RQSLLSHLTLVLGKDELAAQCXXXXXXXXXXNKVDVVTVGRLSLNFTGFN---RESVSIF 377
           R +L++ L+  L  D+LAA+            +   + +G L+LN + F    + + S  
Sbjct: 680 RDALITFLSGGLAGDKLAAELVLLATIARIHVRRANLCLGALTLNVSNFGAAGKTASSAE 739

Query: 378 GNQLNNLFQRLLPYSQVIPLSIEYLNT--ATLQPRKDNQSGRLVTGVLQLPQGTHLTFDE 435
             QL+     LLP    + + +  LN     L  R   +   L  G LQL  GT +  +E
Sbjct: 740 QTQLSRRLNMLLPAVVDVSMELASLNDDRKPLYARSAGEGTGLEAGRLQLVNGTTIVVNE 799

Query: 436 TLLQSGSLTSKGVENTMLLKNLMESQKVEYDFEFYKLEMATDVQLLILSEGKSNILPSDL 495
             +  G L   G+ N   L +++ES K+ Y F + + E  TD+  ++LS+GKS  LP D+
Sbjct: 800 GTMGEGQLKESGIRNIRALSSVLESHKLPYAFPYSEFEFDTDLNAIVLSQGKS-FLPFDI 858

Query: 496 IVPFRP---------SSVPAVNASSEELESWRWYLATVRSLPQSTETD----TYQMIQDE 542
             P  P         SSVP   A  E+L  WR  L   R L  +   +      + IQ E
Sbjct: 859 HCPLSPEAGSEDLYSSSVPKDEA--EQLAGWRSALLEARGLATAKAFEIPDSVSEHIQHE 916

Query: 543 MVNAMRDDR---------------SLGCSELSRWLTMAQIMAASFGEKSLSMEHWQMVKE 587
            V   R ++               +LG  +L R +++ +++A S  EK+L++E W    E
Sbjct: 917 FVAERRKEQQESKDAHGGVASKEGALGQEDLLRRMSLVRLLAISHAEKTLTIERWNSAVE 976

Query: 588 LERLRKERL 596
           L++   +R+
Sbjct: 977 LDKQLMQRV 985



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,862,797
Number of extensions: 844590
Number of successful extensions: 2159
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2157
Number of HSP's successfully gapped: 2
Length of query: 597
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 490
Effective length of database: 11,448,903
Effective search space: 5609962470
Effective search space used: 5609962470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)