BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0166800 Os01g0166800|AK073783
         (597 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40550.1  | chr2:16934927-16938033 FORWARD LENGTH=590          544   e-155

>AT2G40550.1 | chr2:16934927-16938033 FORWARD LENGTH=590
          Length = 589

 Score =  544 bits (1401), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 289/606 (47%), Positives = 381/606 (62%), Gaps = 26/606 (4%)

Query: 1   MVGPQYDLVGNPLGAVRSTFERAAAESGGHEPVAAFRGKDWGATEVFRSFLFEQGGLDKV 60
           M GP YD + NPLGAVR +F  A   S G++P ++  GKDWG  ++FR +  ++  + +V
Sbjct: 1   MGGPAYDCLTNPLGAVRFSFVNAL--SSGYDPASSV-GKDWGVVDLFRHYFSDESAISQV 57

Query: 61  PVLDESNLGLIKPNTLVRFRGMVQDMLGNEFYVGAFKDGSTWRTNKFSDSSPFSMPHPCD 120
           P+LD S++  ++P TLVRFRGM+QDMLGNEFY GA+KD STWRTNK+SD S F      +
Sbjct: 58  PILDSSSIKWVQPKTLVRFRGMIQDMLGNEFYAGAYKDDSTWRTNKYSDVSQFPEGSSTE 117

Query: 121 SHLWERHLFHCVPVPGQNSWTRESSPGPDLRRIASCFTSEQREKRKRGAD--NDAMXXXX 178
             +WER L +CVPVPG+N WT  SS   +L+      T + REKR R  +   D+M    
Sbjct: 118 IQVWERRLLYCVPVPGKNQWTECSSQ--ELKNRFLDLTGQNREKRVRVDEEMTDSMDSST 175

Query: 179 XXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXHHVPEMNGGDHHIPGSSFSCLVKVYDMP 238
                                             VP+ +G        S  CLVK+YD P
Sbjct: 176 LEAGRNGSPFKKMKVGEAT--------SSASESQVPQTSGIPPATSADSLPCLVKIYDSP 227

Query: 239 ESQVKLNDVSEFIGVYTFDPELAAPNDNSDDIMFDLMEDVTAQLPPSKVPRLHCLVWRNL 298
           ES +KLNDV EF+GV TFDP +    D  D+    L E  + Q+P  KVPRLHCL+ R L
Sbjct: 228 ESDLKLNDVVEFLGVLTFDPIVMMDTDTLDENSDALSEAESVQMPSGKVPRLHCLIHRKL 287

Query: 299 SAHDFL------PRPPAVEPSPILLRGIRQSLLSHLTLVLGKDELAAQCXXXXXXXXXXN 352
               FL      P P     SP + + IR+SL+ +LT +LG D +AAQ            
Sbjct: 288 ETQHFLHGSSLLPEPK----SPQIFKEIRESLMKYLTGLLGNDHIAAQFLLLHLLSKVHG 343

Query: 353 KVDVVTVGRLSLNFTGFNRESVSIFGNQLNNLFQRLLPYSQVIPLSIEYLNTATLQPRKD 412
           +VD V VG+LSLN    N+ES+SIFG QL+   + LLP++Q IPL+IEYLNTA+  P+KD
Sbjct: 344 RVDNVAVGKLSLNLIHLNKESMSIFGTQLSGALKSLLPFTQSIPLTIEYLNTASFGPKKD 403

Query: 413 NQSGRLVTGVLQLPQGTHLTFDETLLQSGSLTSKGVENTMLLKNLMESQKVEYDFEFYKL 472
               RL+ GVLQ+  GTHL  DET LQ G+L S GVEN  LLKNL+E QKVEYDF++YK+
Sbjct: 404 YGINRLMPGVLQIADGTHLILDETELQPGTLNSVGVENANLLKNLLECQKVEYDFQYYKM 463

Query: 473 EMATDVQLLILSEGKSNILPSDLIVPFRPSSVPAVNA-SSEELESWRWYLATVRSLPQST 531
           EMATDVQ+LI SEGKSNI+P+DL++P +PS V ++   + E  E+WR YLAT +SL  S 
Sbjct: 464 EMATDVQMLIFSEGKSNIMPADLVLPLQPSQVNSLEVITPETAETWRCYLATCKSLSHSI 523

Query: 532 ETDTYQMIQDEMVNAMRDDRSLGCSELSRWLTMAQIMAASFGEKSLSMEHWQMVKELERL 591
             +  Q++++++V A + DRSLG  +LSR LTMA++M+ S+GE +LS+EHWQMV ELERL
Sbjct: 524 GQELQQVVENDLVAARQTDRSLGSQDLSRLLTMARMMSVSYGETTLSLEHWQMVLELERL 583

Query: 592 RKERLQ 597
           RKERL+
Sbjct: 584 RKERLK 589



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,581,269
Number of extensions: 533794
Number of successful extensions: 1194
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1191
Number of HSP's successfully gapped: 2
Length of query: 597
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 493
Effective length of database: 8,255,305
Effective search space: 4069865365
Effective search space used: 4069865365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)