FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0166300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0135) R2 : 0.0168
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0795 (0.0285) R2dN8 : 0.0216 R2N8 : 0.0168
σ : 0.255
deviance : 29.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.72 0.25 2.78 0.033 0.09 0.114 0.0299 0.978 0.0847 4.21 47 8 -- --
28.72 0.252 2.78 0.0264 0.0899 0.49 0.0297 -- 0.0847 4.21 46.23 7 -- --
28.72 0.25 2.78 0.0326 0.0901 0.113 -- 0.974 0.0845 4.23 47 7 -- --
28.72 0.251 2.78 0.0262 0.0901 0.487 -- -- 0.0845 4.23 46.1 7 -- --
29.16 0.252 2.78 0.0375 -- 0.0593 -- 1.05 0.0868 -- 45.84 7 -- --
29.41 0.254 2.78 0.0465 0.0848 -- -0.00964 -- 0.0827 4.66 -- -- -- --
29.41 0.254 2.78 0.0465 0.0848 -- -- -- 0.0828 4.67 -- -- -- --
29.16 0.253 2.78 0.0307 -- 0.465 -- -- 0.0868 -- 44.73 5 -- --
28.74 0.251 2.78 -- 0.0907 0.497 -- -- 0.0817 4.21 45.78 7 -- --
29.79 0.255 2.78 0.0497 -- -- -- -- 0.085 -- -- -- -- --
29.47 0.254 2.78 -- 0.0856 -- -- -- 0.0776 4.66 -- -- -- --
29.18 0.252 2.78 -- -- 0.476 -- -- 0.0835 -- 44.73 5 -- --
29.86 0.255 2.79 -- -- -- -- -- 0.0795 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.58 wind 1.0 10 < th dose dependent rect. 1 1
7 25.40 atmosphere 1005.0 30 > th dose dependent rect. 24 3
9 25.48 wind 1.0 10 < th dose independent rect. 1 1
21 26.26 temperature 20.0 30 > th dose dependent rect. 2 1
22 26.27 temperature 20.0 30 > th dose independent rect. 2 1
25 26.38 atmosphere 1005.0 90 > th dose independent rect. 24 1
29 26.53 wind 1.0 30 > th dose independent rect. 2 1
36 26.63 wind 3.0 90 < th dose independent rect. 24 1
39 26.70 temperature 25.0 270 > th dose independent rect. 23 2
42 26.71 temperature 25.0 270 > th dose dependent rect. 23 2
51 26.81 temperature 10.0 30 > th dose independent rect. 2 1
53 26.81 temperature 30.0 30 < th dose independent rect. 2 1
54 26.81 humidity 50.0 30 > th dose independent rect. 2 1
58 26.81 atmosphere 995.0 30 > th dose independent rect. 2 1
61 26.81 atmosphere 1010.0 30 < th dose independent rect. 2 1
63 26.81 radiation 1.0 30 < th dose independent rect. 2 1
68 26.81 precipitation 0.1 30 < th dose independent rect. 2 1
69 26.81 temperature 10.0 30 > th dose independent rect. 3 23
70 26.81 atmosphere 995.0 30 > th dose dependent rect. 2 1
71 26.81 radiation 1.0 30 < th dose dependent rect. 2 1
76 26.81 precipitation 0.1 30 < th dose dependent rect. 2 1
78 26.82 atmosphere 1005.0 10 > th dose independent rect. 24 3
84 26.85 atmosphere 1015.0 30 < th dose dependent rect. 2 1
85 26.86 wind 9.0 30 < th dose dependent rect. 2 1
86 26.86 humidity 50.0 30 > th dose dependent rect. 2 1
147 27.24 temperature 25.0 270 > th dose dependent rect. 22 10
154 27.28 humidity 90.0 10 < th dose dependent rect. 24 1
157 27.30 humidity 80.0 90 > th dose independent rect. 24 1
158 27.31 temperature 30.0 30 < th dose dependent rect. 2 1
161 27.33 radiation 10.0 43200 < th dose dependent rect. 3 1
164 27.33 temperature 20.0 30 > th dose dependent rect. 24 3
170 27.35 wind 9.0 1440 < th dose independent rect. 3 1
171 27.35 temperature 10.0 1440 > th dose independent rect. 3 1
174 27.35 temperature 30.0 1440 < th dose independent rect. 3 1
178 27.35 humidity 50.0 1440 > th dose independent rect. 3 1
187 27.35 atmosphere 995.0 1440 > th dose independent rect. 3 1
188 27.35 radiation 1.0 1440 < th dose independent rect. 3 1
210 27.35 temperature 10.0 1440 > th dose independent rect. 4 23
213 27.35 radiation 1.0 1440 < th dose dependent rect. 3 1
229 27.36 wind 1.0 90 > th dose independent rect. 24 1
232 27.38 humidity 50.0 90 > th dose dependent rect. 24 1
234 27.39 precipitation 0.1 90 < th dose independent rect. 24 1
237 27.39 precipitation 0.1 90 < th dose dependent rect. 24 1
242 27.41 temperature 10.0 90 > th dose independent rect. 24 1
244 27.41 temperature 30.0 90 < th dose independent rect. 24 1
245 27.41 humidity 50.0 90 > th dose independent rect. 24 1
249 27.41 atmosphere 1010.0 90 < th dose independent rect. 24 1
251 27.41 radiation 1.0 90 < th dose independent rect. 24 1
257 27.41 temperature 10.0 90 > th dose independent rect. 1 23
258 27.41 radiation 1.0 90 < th dose dependent rect. 24 1
265 27.43 wind 9.0 90 < th dose independent rect. 1 23
268 27.45 temperature 30.0 90 < th dose dependent rect. 24 1
271 27.46 wind 9.0 30 < th dose independent rect. 3 23
275 27.48 humidity 50.0 10 > th dose independent rect. 3 21
282 27.52 humidity 80.0 30 > th dose independent rect. 24 3
283 27.52 temperature 25.0 270 > th dose independent rect. 22 10
292 27.57 wind 7.0 1440 < th dose independent rect. 1 1
293 27.57 humidity 90.0 30 < th dose independent rect. 24 1
297 27.58 precipitation 0.1 10 < th dose independent rect. 24 3
300 27.58 precipitation 0.1 10 < th dose dependent rect. 24 3
302 27.59 humidity 50.0 10 > th dose dependent rect. 24 3
310 27.60 temperature 10.0 10 > th dose independent rect. 24 3
312 27.60 temperature 30.0 10 < th dose independent rect. 24 3
313 27.60 humidity 50.0 10 > th dose independent rect. 24 3
317 27.60 atmosphere 1010.0 10 < th dose independent rect. 24 3
319 27.60 radiation 1.0 10 < th dose independent rect. 24 3
324 27.60 temperature 10.0 10 > th dose independent rect. 3 21
326 27.60 radiation 1.0 10 < th dose dependent rect. 24 3
331 27.61 temperature 10.0 1440 > th dose independent rect. 1 1
335 27.61 temperature 30.0 1440 < th dose independent rect. 1 1
339 27.61 humidity 50.0 1440 > th dose independent rect. 1 1
349 27.61 atmosphere 995.0 1440 > th dose independent rect. 1 1
350 27.61 radiation 1.0 1440 < th dose independent rect. 1 1
374 27.61 wind 9.0 10 < th dose independent rect. 3 21
375 27.61 temperature 10.0 1440 > th dose independent rect. 2 23
378 27.61 radiation 1.0 1440 < th dose dependent rect. 1 1
420 27.63 temperature 10.0 90 > th dose dependent rect. 24 1
429 27.65 wind 1.0 30 > th dose dependent rect. 24 1
468 27.68 temperature 30.0 10 < th dose dependent rect. 24 3
475 27.70 atmosphere 995.0 10 > th dose independent rect. 3 21
487 27.71 temperature 10.0 30 > th dose dependent rect. 24 3
500 27.74 humidity 50.0 10 > th dose dependent rect. 3 21
502 27.75 precipitation 0.1 30 < th dose independent rect. 3 21
505 27.75 atmosphere 1015.0 30 < th dose dependent rect. 24 1
509 27.75 precipitation 0.1 30 < th dose dependent rect. 3 21
572 27.85 temperature 25.0 270 > th dose independent sin 10 NA
575 27.85 precipitation 0.1 30 < th dose independent rect. 3 23
582 27.85 precipitation 0.1 30 < th dose dependent rect. 3 23
603 27.87 atmosphere 1015.0 10 < th dose independent rect. 3 21
606 27.87 atmosphere 995.0 30 > th dose independent rect. 3 23
697 27.95 radiation 40.0 4320 < th dose dependent rect. 1 3
698 27.96 temperature 10.0 1440 > th dose independent rect. 1 3
701 27.96 temperature 30.0 1440 < th dose independent rect. 1 3
705 27.96 humidity 50.0 1440 > th dose independent rect. 1 3
714 27.96 atmosphere 995.0 1440 > th dose independent rect. 1 3
715 27.96 radiation 1.0 1440 < th dose independent rect. 1 3
736 27.96 temperature 10.0 1440 > th dose independent rect. 4 21
742 27.96 radiation 1.0 1440 < th dose dependent rect. 1 3
772 28.00 temperature 25.0 270 < th dose independent sin 10 NA
818 28.02 radiation 20.0 10 < th dose dependent rect. 3 21
819 28.03 atmosphere 1015.0 1440 < th dose independent rect. 1 1
907 28.08 radiation 20.0 30 < th dose independent rect. 3 21
913 28.09 wind 1.0 30 > th dose independent rect. 24 3
937 28.11 wind 1.0 10 < th dose dependent rect. 24 6
942 28.12 temperature 20.0 10 < th dose independent rect. 24 3
943 28.12 precipitation 0.1 30 < th dose independent rect. 1 23
945 28.12 temperature 30.0 10 > th dose dependent rect. 10 1
949 28.12 precipitation 0.1 30 < th dose dependent rect. 1 23
951 28.13 temperature 25.0 270 < th dose independent rect. 21 12