BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0166300 Os01g0166300|J065188L13
         (105 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0166300  Hypothetical protein                                177   2e-45
Os05g0165400  Conserved hypothetical protein                       79   1e-15

>Os01g0166300 Hypothetical protein
          Length = 105

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 88/105 (83%)

Query: 1   MQSFSGIQALQRHFPCFLDXXXXXXXXXXXXXXXXXKATFYSGRVHRQFVPVGKLLKPVL 60
           MQSFSGIQALQRHFPCFLD                 KATFYSGRVHRQFVPVGKLLKPVL
Sbjct: 1   MQSFSGIQALQRHFPCFLDFIYAAARRFIFFYLLFIKATFYSGRVHRQFVPVGKLLKPVL 60

Query: 61  NEHVTPITCYWSLVLLLHSEDKLVRVFKVNFSCFQLVSSALRGIR 105
           NEHVTPITCYWSLVLLLHSEDKLVRVFKVNFSCFQLVSSALRGIR
Sbjct: 61  NEHVTPITCYWSLVLLLHSEDKLVRVFKVNFSCFQLVSSALRGIR 105



>Os05g0165400 Conserved hypothetical protein
          Length = 201

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 43/49 (87%)

Query: 40  FYSGRVHRQFVPVGKLLKPVLNEHVTPITCYWSLVLLLHSEDKLVRVFK 88
           F+SGRVHR+FVP+GK+LKP+LNE VTP+TCYWSL LLL  E++L  VF+
Sbjct: 115 FWSGRVHRRFVPIGKILKPLLNECVTPVTCYWSLALLLRDEEELRLVFQ 163



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.142    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,603,726
Number of extensions: 73786
Number of successful extensions: 141
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 105
Length of database: 17,035,801
Length adjustment: 73
Effective length of query: 32
Effective length of database: 13,224,179
Effective search space: 423173728
Effective search space used: 423173728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)