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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0164900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BRCA2 repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0399) R2 : 0.161
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.14 (0.578) R2dE : 0.146 R2E : 0.147
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.196 (0.0841) R2dN8 : 0.0139 R2N8 : 0.0146
σ : 0.75
deviance : 259.19
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.3
memory length : 7
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.11
open length of G : 1.51

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.81 0.753 3.07 -0.109 0.186 12.3 -0.207 -42.5 -0.193 20.9 25.1 31 5.03 0.984
260.36 0.752 3.04 0.125 0.0423 5.49 -0.424 -- -0.205 2.16 25.04 37 5.22 1.11
256.81 0.746 3.06 -0.138 0.183 14.3 -- -52.9 -0.173 20 25.2 34 5.03 1.09
258 0.753 3.04 0.0887 0.186 5.2 -- -- -0.194 20.5 25.31 8 4.82 1.22
258.68 0.749 3.08 -0.153 -- 15.3 -- -59.3 -0.203 -- 25.25 26 4.92 1.09
302.31 0.815 3.05 0.124 0.119 -- -0.355 -- -0.227 22.8 -- -- -- --
302.83 0.815 3.04 0.138 0.121 -- -- -- -0.226 23.1 -- -- -- --
258.98 0.75 3.03 0.0873 -- 5.14 -- -- -0.196 -- 25.3 7 5.11 1.51
257.28 0.747 3.04 -- 0.188 5.14 -- -- -0.203 20.5 25.21 9 5.01 1.48
303.74 0.814 3.04 0.141 -- -- -- -- -0.225 -- -- -- -- --
303.33 0.815 3.05 -- 0.122 -- -- -- -0.242 23.1 -- -- -- --
259.19 0.75 3.03 -- -- 5.14 -- -- -0.196 -- 25.3 7 5.11 1.51
304.26 0.814 3.05 -- -- -- -- -- -0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 258.46 temperature 25 30 > th dose dependent rect. 5 1
3 259.71 temperature 25 30 > th dose independent rect. 5 1
13 271.81 temperature 30 1440 < th dose independent rect. 9 4
14 271.82 temperature 30 1440 < th dose independent rect. 11 2
17 272.21 temperature 30 1440 > th dose independent rect. 11 2
19 272.27 temperature 30 1440 > th dose independent rect. 9 4
20 272.36 temperature 30 1440 < th dose independent rect. 18 19
23 272.42 temperature 30 1440 < th dose independent rect. 23 14
24 272.43 temperature 30 1440 < th dose independent rect. 4 9
26 272.43 temperature 30 1440 < th dose independent rect. 20 17
41 272.83 temperature 25 720 > th dose dependent rect. 18 16
42 272.90 temperature 30 1440 > th dose independent rect. 18 19
120 273.62 temperature 30 1440 < th dose independent sin 9 NA
126 273.76 temperature 30 1440 > th dose dependent rect. 13 1
127 273.77 temperature 25 1440 > th dose dependent rect. 2 6
152 274.20 temperature 30 1440 > th dose independent sin 8 NA
170 274.34 temperature 25 1440 > th dose dependent rect. 7 1
178 274.39 temperature 30 1440 > th dose dependent rect. 18 20
196 274.52 temperature 25 4320 < th dose independent rect. 7 1
207 274.70 temperature 25 1440 > th dose dependent rect. 18 1
248 274.98 temperature 25 4320 > th dose independent rect. 7 1
277 275.09 temperature 30 1440 > th dose independent rect. 16 1
278 275.09 temperature 30 1440 < th dose independent rect. 16 1
280 275.09 temperature 30 1440 > th dose dependent sin 6 NA
411 275.53 temperature 10 1440 > th dose dependent rect. 18 1
463 275.62 temperature 30 1440 > th dose independent rect. 9 9
532 275.71 temperature 30 1440 > th dose dependent no NA NA
685 275.81 temperature 30 1440 < th dose independent rect. 16 13
698 275.83 temperature 30 1440 < th dose independent rect. 9 9
699 275.83 temperature 30 1440 < th dose independent rect. 9 20
706 275.84 temperature 30 1440 < th dose independent rect. 9 18
709 275.85 temperature 30 1440 < th dose independent rect. 16 9
725 275.87 temperature 30 1440 < th dose dependent rect. 18 1
739 275.90 temperature 30 1440 < th dose independent rect. 16 5
812 275.95 temperature 30 1440 > th dose independent no NA NA