BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0164900 Os01g0164900|AK064137
         (481 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0164900  BRCA2 repeat containing protein                     885   0.0  

>Os01g0164900 BRCA2 repeat containing protein
          Length = 481

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/481 (91%), Positives = 442/481 (91%)

Query: 1   MQRRWQVWGKPDGSLVWVXXXXXXXXXXXXXXXXXXXXXDPQPAATELGEARSGDAIPEG 60
           MQRRWQVWGKPDGSLVWV                     DPQPAATELGEARSGDAIPEG
Sbjct: 1   MQRRWQVWGKPDGSLVWVPASDGPPPPAAAASEAPLPRPDPQPAATELGEARSGDAIPEG 60

Query: 61  PGAADGCSVPSMADLFNQALDKLVAADGMAEAIEDSGKGAVFCTGLGGSVAVSERAVERA 120
           PGAADGCSVPSMADLFNQALDKLVAADGMAEAIEDSGKGAVFCTGLGGSVAVSERAVERA
Sbjct: 61  PGAADGCSVPSMADLFNQALDKLVAADGMAEAIEDSGKGAVFCTGLGGSVAVSERAVERA 120

Query: 121 KALVGEVAEEISNERRQPFGDGSNLECGLGESNVSFKGGVHKDSLSPMFQTGSGKMVSLS 180
           KALVGEVAEEISNERRQPFGDGSNLECGLGESNVSFKGGVHKDSLSPMFQTGSGKMVSLS
Sbjct: 121 KALVGEVAEEISNERRQPFGDGSNLECGLGESNVSFKGGVHKDSLSPMFQTGSGKMVSLS 180

Query: 181 KGSIQKARAVLEGNAENSSVIAVQSMFHTGLVRPDPVSRSSTDNAMTVLEGQTNPKQGDV 240
           KGSIQKARAVLEGNAENSSVIAVQSMFHTGLVRPDPVSRSSTDNAMTVLEGQTNPKQGDV
Sbjct: 181 KGSIQKARAVLEGNAENSSVIAVQSMFHTGLVRPDPVSRSSTDNAMTVLEGQTNPKQGDV 240

Query: 241 ADVYDKENFPLFQTGSGKXXXXXXXXIQKAKAVLEQNNTVENTEDFGRPDQSLIFQTGSR 300
           ADVYDKENFPLFQTGSGK        IQKAKAVLEQNNTVENTEDFGRPDQSLIFQTGSR
Sbjct: 241 ADVYDKENFPLFQTGSGKAVSVSVASIQKAKAVLEQNNTVENTEDFGRPDQSLIFQTGSR 300

Query: 301 RPVLISERSSSVVKDGGAENIVFQTGLGRPVVVSQTSIQKARTVLDQECAKRSGHGDTNV 360
           RPVLISERSSSVVKDGGAENIVFQTGLGRPVVVSQTSIQKARTVLDQECAKRSGHGDTNV
Sbjct: 301 RPVLISERSSSVVKDGGAENIVFQTGLGRPVVVSQTSIQKARTVLDQECAKRSGHGDTNV 360

Query: 361 SXXXXXXXXXXSVLMSGGLTMNDRSVTPEGGVSMQGNFLEADGHLPLFQTGLGRSISVSK 420
           S          SVLMSGGLTMNDRSVTPEGGVSMQGNFLEADGHLPLFQTGLGRSISVSK
Sbjct: 361 STTTFQTETPTSVLMSGGLTMNDRSVTPEGGVSMQGNFLEADGHLPLFQTGLGRSISVSK 420

Query: 421 GSIKRASALLEPRNITKELEDEAHSDDGCATPMFKTGSGRSITASENSRKKAHVVLEGEE 480
           GSIKRASALLEPRNITKELEDEAHSDDGCATPMFKTGSGRSITASENSRKKAHVVLEGEE
Sbjct: 421 GSIKRASALLEPRNITKELEDEAHSDDGCATPMFKTGSGRSITASENSRKKAHVVLEGEE 480

Query: 481 P 481
           P
Sbjct: 481 P 481



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,691,606
Number of extensions: 647459
Number of successful extensions: 1185
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1158
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 376
Effective length of database: 11,553,331
Effective search space: 4344052456
Effective search space used: 4344052456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)